Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022221
15.1_202017-07-20] 588 sequences; 18,516,783 total letters
Query= NC_021312.1
Length=459984
Score E
Sequences producing significant alignments: (Bits) Value
seq135 122 3e-22
seq153 107 6e-18
seq400 102 2e-16
seq160 93.3 1e-13
>seq135
Length=11372
Score = 122 bits (134), Expect = 3e-22
Identities = 261/384 (68%), Gaps = 12/384 (3%)
Strand=Plus/Plus
Query 59989 ACCAGTACCAATACCCTTTGTTCCATTGATAAGAATCATCGGGATAATTGGGATATAATA 60048
||||||||| ||||| | || |||||||| | | ||| || | | || || ||||
Sbjct 3394 ACCAGTACCGATACCATCTGCACCATTGATCAATACCATTGGAACGGTGGGCATGAAATA 3453
Query 60049 AACTGGCTCAACACTATCACCATCATCTTTTAAGTATGTTAA--AACCTTGTCGTCAATT 60106
| |||| |||| | |||||| || ||||| ||| | |||| ||||| |
Sbjct 3454 ATCTGGTTCAATGCGCATACCATCCTCGACCAAGTA-GTTGAGCAACC----CGTCATCT 3508
Query 60107 TCGGGA---AATATAGCCCGAGTAATCT-TGGATAATTGTGTGAAAATATACCTCTCGGA 60162
| || || || || ||||| ||| |||| || |||||| ||||| | | ||
Sbjct 3509 GCAGGGTGGAAGATTGCTCGAGTCATCCGTGGAAGGTT-TGTGAAGATATAACGGGCAGA 3567
Query 60163 TGCTGCGTCCTTGCCACCCATAAGACGGGTTCCAAATTGTCCGTTTGGCTGGAATAGATT 60222
|||||||| || ||||| |||||| || |||||||| ||||| || | | |||||
Sbjct 3568 AGCTGCGTCTTTACCACCTGCAAGACGAGTACCAAATTGGCCGTTGGGATCCAGCAGATT 3627
Query 60223 AATGTTGTTAGAGCCTACGAAATTTTGAGCGAGACCAACAATAGCACCATTTAAACTGGC 60282
||||||||| ||| ||||| ||||| || | || ||||| | | | ||||||||
Sbjct 3628 GATGTTGTTACTGCCGACGAAGTTTTGTGCTAAGCCGACAATGGTGGAAGTCAAACTGGC 3687
Query 60283 TTCACCGTGATGATATCCAGAATGTTCTGAAACATATCCACTGAATTGTGCGACTTTAAT 60342
|||||| || |||||| | | | || ||||| || || | || ||||| || ||
Sbjct 3688 TTCACCATGGTGATATGCGGTTTTCTCCGAAACGTAGCCGGCAAGCTGAGCGACCTTGAT 3747
Query 60343 TTCGGAGTGGAGTTTTTTCTTGAA 60366
||| | ||| ||| ||||||
Sbjct 3748 TTCTTTGGTGAGGTTTCGCTTGAA 3771
>seq153
Length=95437
Score = 107 bits (118), Expect = 6e-18
Identities = 422/661 (64%), Gaps = 7/661 (1%)
Strand=Plus/Minus
Query 155664 TTGATGGTGCCTAAATTCTTCTGGTTAGATTTACTGTTACAAGCATCCTTGTATAGAATG 155723
|||||||| || | | ||| ||||| || || ||| |||||||||||| |||
Sbjct 84291 TTGATGGTACCAAGGTGCTTTTGGTTGGACTTGGAGTTGGCAGCATCCTTGTAGCAGATG 84232
Query 155724 TATGGGGTTCCTGTCTCCATCTGTGCGTCCAGAATCTTTAGCCAGAGGTCACGGGCATTA 155783
|| ||| || ||||| | || || || || || | ||| || | |||| ||
Sbjct 84231 TAAGGGACACCAGTCTCGGTTTGAGCCTCGAGGATGGCGAACCAAAGCTTCTGGGCTTTG 84172
Query 155784 ATTTGCTTGTTGTATCTGCCTTCCGACTCATATTTCATATACAGCGTTCGGTAATCCTCA 155843
|| || | |||| | | ||| || || ||| ||| || | || |||
Sbjct 84171 ATAGTTTTCCTTCCCTTGCCCTGCCTCTCGTAGCTCTCATAAAGCTTTTCAAATTCTTCA 84112
Query 155844 CCGTAACAATCACTCAGTCCAGGGCACTTATCGGGGCAAAACAGCGACCAAATTTTATTA 155903
|||||| || ||||||||||||| |||| || | || | |||| ||
Sbjct 84111 CCGTAAACGTCGGCAAGTCCAGGGCACTCGGCGGGACACATAAGAGTCCAATCCCCAT-- 84054
Query 155904 CCGATT--ACACGCTCCATAAATACATCACTCGCCCAAATAGCATAGAAAAGGTCCCTTG 155961
| |||| ||||||| ||| || | ||| ||| | || |||||||| || | |
Sbjct 84053 CGGATTCGACACGCTTCATGAAAAGATCGGAGATCCAGAGGGCGTAGAAAAGATCACGAG 83994
Query 155962 CCTTTGACTCCTCATCGCCGTGATTCTTCCGTAGCTCTAAGAATTCCTCAATATCAGGAT 156021
| | |||||| | || || ||||||| || || | ||| || | ||||| |
Sbjct 83993 CTCGTACCTCCTCCTTACCATGGTTCTTCCTTAAGTCAATGAAGTCAAATACATCAGCGT 83934
Query 156022 GGTGTGGCTCCAGATACATAGCAAAACTACCATTCCTCTTG---CCACCCTGATCTACAT 156078
| ||||| ||||| || || || |||| | |||| ||||| ||||| || |
Sbjct 83933 GCCAAGGCTCAAGATAGATGGCGAAGGCACCAGGACGCTTGTTACCACCTTGATCAACGT 83874
Query 156079 ACCGAGCAGTCTTATTGAAGACACCTAGCATAGGAATAATACCATTGGAAGTGCCATTGG 156138
| ||||| || | | | | | ||||||||||| || || ||||| |||||||
Sbjct 83873 ATCGAGCTGTGGCGTCGTAAGCTCGGAGCATAGGAATGATGCCGTTGGAGTAACCATTGG 83814
Query 156139 TTCCGCGAATATGCGAACCAGATGAGCGAACATTATGAATATGTAGTCCAATACCACCTG 156198
| ||| ||| | || || | || | ||| ||||| || || ||||||||||| |
Sbjct 83813 TACCGGCAATGTAGGAGCCCTTCGCACGGATATTGTGAATGTGAAGACCAATACCACCGG 83754
Query 156199 ACCATTTAGAAATTTGAGCGCATTCCTTTACAGTATTGAAAATACCTTCAATAGAATCAT 156258
|| || || ||||| || ||| | ||||| | | ||||| ||||| || ||||
Sbjct 83753 CAGTCTTGGAGATCTGAGCACAGGTCTTGAGAGTATCGTAGATACCATCAATGGAGTCAT 83694
Query 156259 CTTCCATTGATAGTAGATAGCACGAACTTAATTGAGGTCGTGGTGTTCCAGCGTTGAATA 156318
| | ||| | | || |||| || | ||| ||||| || || || |||||||| |
Sbjct 83693 CCTTCATGGCCACGAGGAAGCATGATGACATTTGGGGTCGGGGAGTACCGGCGTTGAAAA 83634
Query 156319 G 156319
|
Sbjct 83633 G 83633
>seq400
Length=79726
Score = 102 bits (112), Expect = 2e-16
Identities = 155/221 (70%), Gaps = 0/221 (0%)
Strand=Plus/Minus
Query 133437 TTCCTTGTATTAAAAAGAAATCTGACTGGGCTATTAAATGGATCCAGGACAAGCGTGCGA 133496
|||||||||| |||||| | ||||||||| || ||||||| ||| | |
Sbjct 63759 TTCCTTGTATCCGAAAGAAGGCCGACTGGGCTCTTCGATGGATCTCTGACCAAAAATCTT 63700
Query 133497 GTTTTGCTACTCGTCTCGTTGCTTTTGCTGTAGTAGAGGGCAtttttttCAGTGGTGCGT 133556
|||| | || ||| |||||||||||| || ||||| || || ||| |||| | |
Sbjct 63699 GTTTCGGCGAGCGACTCATTGCTTTTGCTGCCGTGGAGGGTATCTTCTTCTCTGGTTCTT 63640
Query 133557 TCTGCTCTATTTTTTGGCTTAAAAAGCGTGGTATTCTACCTGGACTGTGTTTTTCTAACG 133616
|| || || || |||||||| ||||| ||| | | ||||| || || |||||||
Sbjct 63639 TCGCGTCCATCTTCTGGCTTAAGAAGCGAGGTCTCATGCCTGGTCTTACCTTCTCTAACG 63580
Query 133617 AACTTATTTCAAGGGACGAGGCACTTCACACCGAATTTGCC 133657
| || || || | ||||||| || |||||||| ||||||
Sbjct 63579 AGCTCATCTCTCGAGACGAGGGTCTCCACACCGACTTTGCC 63539
>seq160
Length=39513
Score = 93.3 bits (102), Expect = 1e-13
Identities = 200/288 (69%), Gaps = 12/288 (4%)
Strand=Plus/Minus
Query 302537 TATTTCTTACGGTCATATCATAACCAATCATAATGTCTTCCATACTCTTGATTAAACGAC 302596
||||||| || || ||||||| ||| | | | ||| ||||| |||| || | |
Sbjct 36183 TATTTCTCACAGTACCATCATAAGCAACCTTCAAGTCCTCCATCGCTTTGACCAATCTTC 36124
Query 302597 GCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCAC 302656
|| ||||||||||| || || || ||||| |||||||| | ||| | |||||||
Sbjct 36123 TTTGGATATAACCAGTCTCAGCAGTCTTGACAGCGGTATCAATCAAACCTTCTCGACCAC 36064
Query 302657 CCATAGCATGGAAGAATAGCTCTTCCG--GTCGTAGCCCCCCAATAAAGGAGCTCTCAAC 302714
||||||| ||||| | | |||| | ||| | || | ||| | | ||| | |||||
Sbjct 36063 CCATAGCGTGGAACCAGAATTCTTGTGGAGTC-AAACCACGCAA-ATACGAGTTTTCAAC 36006
Query 302715 GAAACCACGCGCCTCGGG--CG-AATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGT- 302770
|||||| || | |||||| || | ||||| ||| | |||||||| | | || ||
Sbjct 36005 GAAACCTCGAGACTCGGGTCCGTAGTCGTC--TCTT-GAGAAGTGTGGTAATGACCGGTG 35949
Query 302771 TCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTCCCA 302818
|| | | ||| | | |||||| ||||| |||||| ||| || ||||
Sbjct 35948 TCGGA-ATCCGAACGAGATACGTTTTCCTTCAACGAACTGTTGACCCA 35902
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1471806511694156
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |