Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022221
15.1_202017-07-20] 588 sequences; 18,516,783 total letters
Query= NC_026922.1
Length=157977
Score E
Sequences producing significant alignments: (Bits) Value
seq400 134 1e-26
>seq400
Length=79726
Score = 134 bits (148), Expect = 1e-26
Identities = 166/227 (73%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546
|| |||| ||| ||||| ||||| || || ||||| |||||||| || ||||| ||| |
Sbjct 77947 CCACCTCGGAGACGCAAGACGAGATGGAGAGTGGACTCCTTTTGGATATTGTAATCGGAA 77888
Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606
| || | ||| || || || || || || |||||||| |||||||| || || ||
Sbjct 77887 AGAGTTCGGCCGTCTTCAAGTTGCTTTCCGGCGAAAATCAATCGCTGCTGGTCAGGAGGG 77828
Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666
|| || || || ||||| || || ||||| ||| | || ||| |||||| ||
Sbjct 77827 ATACCCTCCTTGTCTTGGATCTTGGCCTTGACATTGTCGATGGTATCGCTCGATTCGACT 77768
Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713
|| || ||||||||||| ||||| | ||||| ||||| ||||||||
Sbjct 77767 TCAAGGGTAATGGTTTTGCCGGTGAGGGTTTTGACGAAGATTTGCAT 77721
Score = 134 bits (148), Expect = 1e-26
Identities = 155/209 (74%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 134505 ACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCG 134564
|| ||||| || || ||||||||||| |||||||||||| || || || || ||
Sbjct 78436 ACAAGGTGAAGGGTAGATTCCTTTTGGATGTTGTAGTCGGAAAGAGTACGACCATCCTCA 78377
Query 134565 AGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGA 134624
|| ||||| || ||||||||||| || |||||||| || || || ||||| || || |||
Sbjct 78376 AGTTGTTTACCAGCAAAAATCAATCGTTGCTGATCAGGAGGAATACCTTCCTTGTCCTGA 78317
Query 134625 ATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTA 134684
|| || || || ||| | ||||| ||||| || || |||||||| || || ||
Sbjct 78316 ATCTTCGCCTTAACGTTGTCGATAGTGTCAGACGACTCGACTTCGAGAGTGATAGTCTTT 78257
Query 134685 CCGGTTAAAGTTTTAACGAAAATTTGCAT 134713
||||| ||||| || || || || |||||
Sbjct 78256 CCGGTCAAAGTCTTGACAAAGATCTGCAT 78228
Score = 104 bits (114), Expect = 2e-17
Identities = 120/162 (74%), Gaps = 0/162 (0%)
Strand=Plus/Minus
Query 134559 TCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTT 134618
|| || ||||| || || ||||| ||||| || ||||| || || || || || || ||
Sbjct 77596 TCTTCAAGCTGCTTACCAGCAAAGATCAATCGTTGCTGGTCAGGAGGGATACCCTCCTTG 77537
Query 134619 TCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATG 134678
|| || || || ||||| ||| | |||||||| || ||||| || ||||| ||
Sbjct 77536 TCCTGGATCTTGGCCTTGACATTGTCGATGGTGTCGGAAGACTCCACTTCAAGAGTGATA 77477
Query 134679 GTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTTGTTT 134720
|| |||||||| | ||| || |||||||||||||| |||||
Sbjct 77476 GTCTTACCGGTGAGAGTCTTGACGAAAATTTGCATGGTGTTT 77435
Score = 96.9 bits (106), Expect = 4e-15
Identities = 143/203 (70%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546
|| |||| ||| ||||| ||||| || || ||||| ||||||||||| ||||| ||| |
Sbjct 78735 CCACCTCGGAGACGCAAGACGAGATGGAGAGTGGACTCCTTTTGAATATTGTAATCGGAA 78676
Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606
| || | || || || ||||| || || || || | || |||||||| || ||
Sbjct 78675 AGAGTTCGGCCATCTTCAAGTTGTTTTCCGGCGAAGATGAGTCGTTGCTGATCAGGGGGG 78616
Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666
|| || || || ||||| || || ||||| ||| | || ||| |||||| ||
Sbjct 78615 ATACCCTCCTTGTCTTGGATCTTGGCCTTGACATTGTCGATGGTATCGCTCGATTCGACT 78556
Query 134667 TCGAGAGTAATGGTTTTACCGGT 134689
|| ||||| || || ||||| ||
Sbjct 78555 TCAAGAGTGATTGTCTTACCCGT 78533
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 505394685321760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |