Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022221
35.1_202017-07-20] 511 sequences; 18,560,305 total letters
Query= NC_008168.1
Length=104710
Score E
Sequences producing significant alignments: (Bits) Value
seq460 140 2e-28
seq434 140 2e-28
seq324 113 3e-20
>seq460
Length=3015
Score = 140 bits (154), Expect = 2e-28
Identities = 88/95 (93%), Gaps = 5/95 (5%)
Strand=Plus/Plus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 2131 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 2190
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
|||||| ||||||||||||||||||||||||||||
Sbjct 2191 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 2225
>seq434
Length=4975
Score = 140 bits (154), Expect = 2e-28
Identities = 88/95 (93%), Gaps = 5/95 (5%)
Strand=Plus/Plus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 2783 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 2842
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
|||||| ||||||||||||||||||||||||||||
Sbjct 2843 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 2877
Score = 82.4 bits (90), Expect = 5e-11
Identities = 67/81 (83%), Gaps = 4/81 (5%)
Strand=Plus/Plus
Query 19947 CTCTCTCTTCAAAGTTCTTTTC----AACTTTCCCTCACGGTACTTGTTCGCTATCGGTC 20002
|||||| | |||||| |||||| | ||||||||||||||||||||||||||||||||
Sbjct 4775 CTCTCTTTCCAAAGTGCTTTTCTTTCATCTTTCCCTCACGGTACTTGTTCGCTATCGGTC 4834
Query 20003 TCGCGGTAATATTTAGCCTTA 20023
| | |||||||||| |||
Sbjct 4835 TTCCACCAATATTTAGCTTTA 4855
>seq324
Length=79723
Score = 113 bits (124), Expect = 3e-20
Identities = 148/205 (72%), Gaps = 0/205 (0%)
Strand=Plus/Minus
Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148
||||||||| | |||||| || | ||| |||||| ||||||||||||||||||||| |
Sbjct 78734 TACCACCTCGGAGACGCAAGACGAGATGGAGAGTGGACTCCTTTTGAATATTGTAATCGG 78675
Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208
| | | || | || || | |||||||||||| || || || ||||| ||||| | ||
Sbjct 78674 AAAGAGTTCGGCCATCTTCAAGTTGTTTTCCGGCGAAGATGAGTCGTTGCTGATCAGGGG 78615
Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268
||| || || ||||| || || ||| ||||| | || ||||| | ||| |
Sbjct 78614 GGATACCCTCCTTGTCTTGGATCTTGGCCTTGACATTGTCGATGGTATCGCTCGATTCGA 78555
Query 38269 CTTCTAATGTAATAGTTTTACCCGT 38293
|||| | || || || ||||||||
Sbjct 78554 CTTCAAGAGTGATTGTCTTACCCGT 78530
Score = 111 bits (122), Expect = 1e-19
Identities = 162/229 (71%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148
||||||||| | |||||| || | ||| |||||| ||||||||| ||||||||||| |
Sbjct 77946 TACCACCTCGGAGACGCAAGACGAGATGGAGAGTGGACTCCTTTTGGATATTGTAATCGG 77887
Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208
| | | || |||| || | ||| |||||||| || || | || || || || | |
Sbjct 77886 AAAGAGTTCGGCCGTCTTCAAGTTGCTTTCCGGCGAAAATCAATCGCTGCTGGTCAGGAG 77827
Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268
||| || || ||||| || || ||| ||||| | || ||||| | ||| |
Sbjct 77826 GGATACCCTCCTTGTCTTGGATCTTGGCCTTGACATTGTCGATGGTATCGCTCGATTCGA 77767
Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317
|||| | ||||| ||||| || || | |||||| ||||| || |||||
Sbjct 77766 CTTCAAGGGTAATGGTTTTGCCGGTGAGGGTTTTGACGAAGATTTGCAT 77718
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 334945114011641
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |