Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022221 35.1_202017-07-20] 511 sequences; 18,560,305 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq324 127 2e-24 >seq324 Length=79723 Score = 127 bits (140), Expect = 2e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 ||| |||| | |||||| || | ||| | ||| ||||||||| ||||||||||| | Sbjct 77945 ACCACCTCGGAGACGCAAGACGAGATGGAGAGTGGACTCCTTTTGGATATTGTAATCGGA 77886 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 ||||| || |||| || || ||||| || ||||| || | |||||||||||| | || Sbjct 77885 AAGAGTTCGGCCGTCTTCAAGTTGCTTTCCGGCGAAAATCAATCGCTGCTGGTCAGGAGG 77826 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 42160 | | ||||||||| ||| || |||| | | | || ||||||||||| || Sbjct 77825 GATACCCTCCTTGTCTTGGATCTTGGCCTTGACATTGTCGATGGTATCGCTCGATTCGAC 77766 Query 42161 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || | || ||||||||||| || || || || || ||||||||||| Sbjct 77765 TTCAAGGGTAATGGTTTTGCCGGTGAGGGTTTTGACGAAGATTTGCAT 77718 Score = 98.7 bits (108), Expect = 1e-15 Identities = 146/207 (71%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 ||| |||| | |||||| || | ||| | ||| ||||||||||||||||||||| | Sbjct 78733 ACCACCTCGGAGACGCAAGACGAGATGGAGAGTGGACTCCTTTTGAATATTGTAATCGGA 78674 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 ||||| || | || || || || || || ||||| |||||||| ||||| || | || Sbjct 78673 AAGAGTTCGGCCATCTTCAAGTTGTTTTCCGGCGAAGATGAGTCGTTGCTGATCAGGGGG 78614 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 42160 | | ||||||||| ||| || |||| | | | || ||||||||||| || Sbjct 78613 GATACCCTCCTTGTCTTGGATCTTGGCCTTGACATTGTCGATGGTATCGCTCGATTCGAC 78554 Query 42161 ATCGACCGTGATGGTTTTGCCCGTTAG 42187 || | ||||| || || ||||| || Sbjct 78553 TTCAAGAGTGATTGTCTTACCCGTAAG 78527 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543209330228240