Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022221 35.1_202017-07-20] 511 sequences; 18,560,305 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq324 170 4e-37 seq115 102 2e-16 >seq324 Length=79723 Score = 170 bits (188), Expect = 4e-37 Identities = 184/244 (75%), Gaps = 0/244 (0%) Strand=Plus/Plus Query 48123 AGAGCATGCAGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGA 48182 |||| | ||||||||||| |||| | || ||||| || ||||||| |||| |||| Sbjct 63526 AGAGGAGACAGGCAAAGTCGGTGTGGAGACCCTCGTCTCGAGAGATGAGCTCGTTAGAGA 63585 Query 48183 AGCAGAGACCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAG 48242 || ||||||||||||| || | || || |||||||| || | ||||||||| |||| Sbjct 63586 AGGTAAGACCAGGCATGAGACCTCGCTTCTTAAGCCAGAAGATGGACGCGAAAGAACCAG 63645 Query 48243 AGAAGAAGATGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCT 48302 |||||||||| |||||||| || || || || |||| | ||| |||||| ||| || | Sbjct 63646 AGAAGAAGATACCCTCCACGGCAGCAAAAGCAATGAGTCGCTCGCCGAAACAAGATTTTT 63705 Query 48303 TGTCTGAGATCCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTA 48362 ||| |||||||| ||| |||||||| |||||||| ||| || || || || || | Sbjct 63706 GGTCAGAGATCCATCGAAGAGCCCAGTCGGCCTTCTTTCGGATACAAGGAATGGTGTCCA 63765 Query 48363 TGGC 48366 | || Sbjct 63766 TAGC 63769 >seq115 Length=95448 Score = 102 bits (112), Expect = 2e-16 Identities = 286/436 (66%), Gaps = 5/436 (1%) Strand=Plus/Minus Query 213531 TACTCCATGATCTCGGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGGTTT 213590 ||||||||||| || || || ||||| ||| || |||||| || |||| || ||||| Sbjct 84324 TACTCCATGATTTCAGTACAGAGGTTACTGGATTTGATGGTACCAAGGTGCTTTTGGTTG 84265 Query 213591 GACTTTGCGTTGGCAGAATCCTTGTAGAGCATGTAGGGGGACCCGGTCTCTAGCTGGGAC 213650 ||||| | |||||||| |||||||||| ||||| ||| || ||||| || | | Sbjct 84264 GACTTGGAGTTGGCAGCATCCTTGTAGCAGATGTAAGGGACACCAGTCTCGGTTTGAGCC 84205 Query 213651 ACCAGTATCTGGCTCCAGAGGTACCTGGCCTTGACCACCCGCCTGACAGCTCCGGGCGTA 213710 | || || | ||| || | | ||| |||| ||| | || || | Sbjct 84204 TCGAGGATGGCGAACCAAAGCTTCTGGGCTTTGATAGTTTTCCTTCCCTTGCCCTGCCT- 84146 Query 213711 GCCTCGTACTGTTCGTAGAGCTCGTTGAATTCGTGGCCCCAGACCCTGTCCAGTCCCGGA 213770 |||||| || || |||| | ||||| | || | || | | ||||| || Sbjct 84145 --CTCGTAGCTCTCATAAAGCTTTTCAAATTCTTCACCGTAAACGTCGGCAAGTCCAGGG 84088 Query 213771 CAGGATGCGGGACACATGAGGCTCCAGTCCCCGTCATCTCTGACTCTCTGCATGAACAGG 213830 || ||||||||||| || |||| ||||| || | ||| | || |||||| || Sbjct 84087 CACTCGGCGGGACACATAAGAGTCCAATCCCCATCGGATTCGACACGCTTCATGAAAAGA 84028 Query 213831 TCCGGGACCCACAGCGCGGTGAACAGGTC-CCTGGTCCTCCTCTCGTCCACTCCAGAGTT 213889 || | || ||| || ||| ||| || || | | || | | ||| ||| ||| ||| Sbjct 84027 TCGGAGATCCAGAGGGCGTAGAAAAGATCACGAGCTCGTAC-CTCCTCCTTACCATGGTT 83969 Query 213890 TTTGCGCAGATCTAGAAAGTCAAAGATGTCCGCGTGCCACGGCTCCATGTAGATGGCAAA 213949 || | | || | |||||||| | || |||||||| ||||| | |||||||| || Sbjct 83968 CTTCCTTAAGTCAATGAAGTCAAATACATCAGCGTGCCAAGGCTCAAGATAGATGGCGAA 83909 Query 213950 GGCGCCCGGCCTCTTG 213965 ||| || || | |||| Sbjct 83908 GGCACCAGGACGCTTG 83893 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931526849834240