Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022221
35.1_202017-07-20] 511 sequences; 18,560,305 total letters
Query= NC_020852.1
Length=186468
Score E
Sequences producing significant alignments: (Bits) Value
seq115 134 2e-26
seq68 129 7e-25
seq324 114 2e-20
>seq115
Length=95448
Score = 134 bits (148), Expect = 2e-26
Identities = 708/1119 (63%), Gaps = 31/1119 (3%)
Strand=Plus/Plus
Query 75326 CTCTTCAATGCTGGTACACCAAGACCGCAGATGTCCAGTTGCTTCCTTATCGCCAACAAG 75385
|| ||||| || ||||| || |||| || ||||| |||||||| | |||| |||
Sbjct 83633 CTTTTCAACGCCGGTACTCCCCGACCCCAAATGTCATCATGCTTCCTCGTGGCCATGAAG 83692
Query 75386 GAGGACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGG 75445
|| ||||| || | |||||||| | ||||| | | ||||| || ||||| |||
Sbjct 83693 GATGACTCCATTGATGGTATCTACGATACTCTCAAGACCTGTGCTCAGATCTCCAAGACT 83752
Query 75446 GCTGGGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGG 75505
|| || |||||||| | ||||| || || | | || || || ||| ||
Sbjct 83753 GCCGGTGGTATTGGTCTTCACATTCACAATATCCGTGCGAAGGGCTCCTACATTGCCGGT 83812
Query 75506 ACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGC 75565
|| |||||| | || | || || ||||| ||||| || | | |||||||||| ||
Sbjct 83813 ACCAATGGTTACTCCAACGGCATCATTCCTATGCTCCGAGCTTACGACGCCACAGCTCGA 83872
Query 75566 TATGTAAATCAAGCGGGGCGTCGCAAGGG-----GT-CCATCGCGGTCTACTTGGAACCA 75619
|| || |||||| || | |||| | || || |||| |||| | || ||
Sbjct 83873 TACGTTGATCAAGGTGG---TAACAAGCGTCCTGGTGCCTTCGCCATCTATCTTGAGCCT 83929
Query 75620 TGGCATGCCGATATCATGGAGTTCCTTGAGTTACGACTCAACCAAGGTGACGAAGAGGCT 75679
||||| || ||| | | || ||| |||| ||| | ||||| ||| | || ||||
Sbjct 83930 TGGCACGCTGATGTATTTGACTTCATTGACTTAAGGAAGAACCATGGTAAGGAGGAGGTA 83989
Query 75680 CGGTGTAGAGATCTCTTTTCATCCCTGTGGATTCCAGACCTTTTCATGAAGCGGGTTGAG 75739
|| | | ||||| || | |||| ||||| | || |||||||||||||| || ||
Sbjct 83990 CGAGCTCGTGATCTTTTCTACGCCCTCTGGATCTCCGATCTTTTCATGAAGCGTGTCGAA 84049
Query 75740 GAGGGTGGTCAATGGTCTCTTTTCTGTCCAGACAAGGCACCAGGTCTCTCCGACGCGGTG 75799
| ||| | ||| ||||| | ||||| | | || || || || ||||||
Sbjct 84050 TCCGATGGGGATTGGACTCTTATGTGTCCCGCCGAGTGCCCTGGACTTGCCGACGTTTAC 84109
Query 75800 GGTGAGGAGTTTGAAGCCCTCTACACAAAGTATGAAGAGG-AGGGTAGAGCCAATG-CGA 75857
||||| || |||||| || || | || | ||||| |||| | || || | |
Sbjct 84110 GGTGAAGAATTTGAAAAGCTTTATGAGAGCTACG-AGAGGCAGGGCA-AGGGAAGGAAAA 84167
Query 75858 CTGTACCAGCCGCCGATG-TTTGGAAGGCTATTCTCAAATCACAGACGGAGACTGGAACA 75916
|| | |||| | || | ||||| || || ||| | | || || ||||||||
Sbjct 84168 CTATCAAAGCC-CAGAAGCTTTGGTTCGCCATCCTCGAGGCTCAAACCGAGACTGGTGTC 84226
Query 75917 CCATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAGAATTTGGGAACA 75976
|| || || |||||||||||| ||| ||| ||||||||| | | || ||
Sbjct 84227 CCTTACATCTGCTACAAGGATGCTGCCAACTCCAAGTCCAACCAAAAGCACCTTGGTACC 84286
Query 75977 ATCAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTACACAGATAAGGATGAGACGGCT 76036
||||| | || || || || ||||| | ||||| | | ||||| |||
Sbjct 84287 ATCAAATCCAGTAACCTCTGTACTGAAATCATGGAGTATTCTTCTCCTGATGAAGTTGCT 84346
Query 76037 GTTTGCAATTTGGCATCAATCGCCCTTCCAAAGTATGTCAATGAAGAGACTCGCACTTTT 76096
|| || ||| | || || | || ||||| | || | || |||| | |
Sbjct 84347 GTCTGTAATCTTGCTTCTCTTGCTCTTCCTGCCTTCGTAGACCTGGAACGTCGCGTCTAT 84406
Query 76097 GATTATGAAAAACTTCATGAAATCACAAAGATTGTTACCAAAAATCTAAACCGAGTCATT 76156
|| | |||| || || || || || ||| ||||||| || || || || || ||
Sbjct 84407 GACTTCAAAAAGCTGCACGAGATTACCAAGGTTGTTACAAAGAACCTTGACACTGTAATC 84466
Query 76157 GACAGAAATTTTTATCCCGT---TGAGACTGCGCGAAAGTCTAATATGCGACACAGACCT 76213
| | || | ||||| || |||| || || || || || ||||| || | |||
Sbjct 84467 ACCCGTAACTACTATCCAGTGCCTGAG---GCCCGCAACTCCAACATGCGCCATCGGCCT 84523
Query 76214 ATTGGTTTGGGTGTTCAAGGTCTCGCGGATGTATTTATTTTGTGCCGCTACGCA-----T 76268
||||| | ||||| || ||||| || || | ||| || | || |||| |
Sbjct 84524 GTTGGTCTTGGTGTCCAGGGTCTTGCCGACG-----CTTTCATGGCCCTTCGCATGCCGT 84578
Query 76269 TTGATTCAGATGAAGCCAAGGAGATGAATGCTCGTATCTTTGAAACCATGTATCACGCAT 76328
| || || | ||| || | ||| | ||| | ||||| || || || || |||||
Sbjct 84579 TCGACTCCGCTGAGGCTAGGGAACTCAATATCCAGATCTTCGAGACGATATACCACGCGG 84638
Query 76329 CCCTGGAGGCGAGTTGTGAATTGGCTGAAGCCCAAGGTTCCTATGAGACATTTGAGGGTT 76388
| || |||||| || ||| | || || | ||| ||||||| | | || ||||
Sbjct 84639 CGCTTGAGGCGTCATGCGAACTTGCCGAGGAGTTTGGTACCTATGAATCTTACGAAGGTT 84698
Query 76389 CTCCCGCGTCCCAAGGGGTGCTTCAGTTTGATATGTGGG 76427
||||| || | || | ||||||| || |||||||
Sbjct 84699 CTCCCATCTCTAAGGGTATCCTTCAGTACGACATGTGGG 84737
>seq68
Length=11388
Score = 129 bits (142), Expect = 7e-25
Identities = 288/427 (67%), Gaps = 4/427 (1%)
Strand=Plus/Minus
Query 14358 TGGCGGATGGTCTCAAGCCTTCACAGAGGAAAGTGATGTATGCTTGCTTCCATAAGAATC 14417
|||| || |||||||| ||| ||| | || || | | || ||| ||| | || |
Sbjct 3847 TGGCCGACGGTCTCAAACCTGGTCAGCGAAAGGTTCTCTTTGGTTGTTTCAAGCGAAACC 3788
Query 14418 TCAAGGATGAAATGAAGGTGGCACAACTGGCGGCATATGTCGCGGACAAGTCTGCGTACC 14477
||| | ||||| ||||| || || || || | || || |||| || | || || |
Sbjct 3787 TCACCAAAGAAATCAAGGTCGCTCAGCTTGCCGGCTACGTTTCGGAGAAAACCGCATATC 3728
Query 14478 ACCATGGTGAAGTATCCTTAGCGGACACGATTGTTAAGTTGGCAAACGACTACACGGGTT 14537
|||||||||||| || | ||| ||||| || ||| | ||| | ||
Sbjct 3727 ACCATGGTGAAGCCAGTTTGACTTCCACCATTGTCGGCTTAGCACAAAACTTCGTCGGCA 3668
Query 14538 CAAACAACATTAACCTTCTTGAACCGTGTGGTCAATTTGGTACGCGTCTCATGGGTGGTA 14597
|||||||| || || || || || || ||||||||||| ||||| |||||||
Sbjct 3667 GTAACAACATCAATCTGCTGGATCCCAACGGCCAATTTGGTACTCGTCTTGCAGGTGGTA 3608
Query 14598 AGGATGCTTCTCAGACGAGGTACATTTTCACAAAACTTACCAAGGAGG-CTCGCAAGATC 14656
| || || || | | || || |||||||| ||| ||| ||| | |||| |||
Sbjct 3607 AAGACGCAGCTTCTGCCCGTTATATCTTCACAAACCTT-CCACGGATGACTCGAGCAATC 3549
Query 14657 TTTGATCCTCGGGATGACCCGATCCTCAACTACTTGGACGATGATGG-ACGCTCCATTGA 14715
|| | ||| |||||| | | ||||||||||||| ||| ||||| | || | |||||
Sbjct 3548 TTCCACCCTGCAGATGACGGGTTGCTCAACTACTTGGTCGAGGATGGTATGCGC-ATTGA 3490
Query 14716 ACCAGACTTTTACATGCCAACTTTACCAATGGTTCTCGTGAATGGAACCGAGGGTATCGG 14775
|||||| | || |||||| || | |||||||| | | ||||| | || ||||||||
Sbjct 3489 ACCAGATTATTTCATGCCCACCGTTCCAATGGTATTGATCAATGGTGCAGATGGTATCGG 3430
Query 14776 TACGGGT 14782
||| |||
Sbjct 3429 TACTGGT 3423
>seq324
Length=79723
Score = 114 bits (126), Expect = 2e-20
Identities = 123/160 (77%), Gaps = 2/160 (1%)
Strand=Plus/Minus
Query 65071 TTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATTC 65130
|||| |||||| || |||| ||||| |||||||||||||||||||| || || |||
Sbjct 63694 TTCGGCGAGCGACTCATTGCTTTTGCTGCCGTGGAGGGTATCTTCTTCTCTGGTTCTTTC 63635
Query 65131 TGCG-CTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGA 65189
||| | || | ||| | |||||||| ||||||||||| || || |||||| || ||
Sbjct 63634 -GCGTCCATCTTCTGGCTTAAGAAGCGAGGTCTCATGCCTGGTCTTACCTTCTCTAACGA 63576
Query 65190 ACTTATTTCCCGAGATGAGGGTCTCCACCAGGAGTTTGCC 65229
|| || || ||||| |||||||||||| || ||||||
Sbjct 63575 GCTCATCTCTCGAGACGAGGGTCTCCACACCGACTTTGCC 63536
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 596565789411680
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |