Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022221
35.1_202017-07-20] 511 sequences; 18,560,305 total letters
Query= NC_028094.1
Length=473558
Score E
Sequences producing significant alignments: (Bits) Value
seq324 181 3e-40
seq284 147 7e-30
seq281 136 1e-26
seq35 91.5 4e-13
>seq324
Length=79723
Score = 181 bits (200), Expect = 3e-40
Identities = 181/235 (77%), Gaps = 0/235 (0%)
Strand=Plus/Minus
Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562
||| |||||||||||| | | |||||||| ||||| ||||| || ||||| || || |
Sbjct 78459 TTTGCATACCACCACGCAGACGGAGAACAAGGTGAAGGGTAGATTCCTTTTGGATGTTGT 78400
Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622
| || || | || || ||||| ||||||||||| |||||||| || | ||||||||||
Sbjct 78399 AGTCGGAAAGAGTACGACCATCCTCAAGTTGTTTACCAGCAAAAATCAATCGTTGCTGAT 78340
Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682
|||||||||| ||||| || |||||||| || || || || || || || | ||||| |
Sbjct 78339 CAGGAGGAATACCTTCCTTGTCCTGAATCTTCGCCTTAACGTTGTCGATAGTGTCAGACG 78280
Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737
|| ||||| || || | ||||||||||| | || || ||||| ||||||||
Sbjct 78279 ACTCGACTTCGAGAGTGATAGTCTTTCCGGTCAAAGTCTTGACAAAGATCTGCAT 78225
Score = 158 bits (174), Expect = 4e-33
Identities = 162/212 (76%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 140505 TACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAA 140564
||||||||||| || | | | || ||||| ||||| ||||| ||||||||||| |||
Sbjct 78738 TACATACCACCTCGGAGACGCAAGACGAGATGGAGAGTGGACTCCTTTTGAATATTGTAA 78679
Query 140565 TCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCA 140624
|| || | ||||| |||||||||||||||||||| || ||||| || ||||||||||||
Sbjct 78678 TCGGAAAGAGTTCGGCCATCTTCAAGTTGTTTTCCGGCGAAGATGAGTCGTTGCTGATCA 78619
Query 140625 GGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGT 140684
|| || || || || || || || || || || || ||||| || || | ||| | |
Sbjct 78618 GGGGGGATACCCTCCTTGTCTTGGATCTTGGCCTTGACATTGTCGATGGTATCGCTCGAT 78559
Query 140685 TCAACTTCAAGTGTAACTGTCTTTCCGGTTAG 140716
|| |||||||| || | |||||| || || ||
Sbjct 78558 TCGACTTCAAGAGTGATTGTCTTACCCGTAAG 78527
Score = 147 bits (162), Expect = 7e-30
Identities = 138/176 (78%), Gaps = 0/176 (0%)
Strand=Plus/Minus
Query 140562 TAATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGA 140621
|||||||| || ||||| ||||| || ||||| ||||| || ||||| | ||||| ||
Sbjct 78121 TAATCAGACAAAGTTCGACCATCCTCCAGTTGCTTTCCGGCGAAGATCAATCGTTGTTGG 78062
Query 140622 TCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGAT 140681
|||||||| || || || || |||||||| || || || ||||| ||||| | |||||
Sbjct 78061 TCAGGAGGGATACCCTCCTTGTCCTGAATCTTCGCCTTGACATTGTCAATGGTGTCAGAG 78002
Query 140682 GGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737
| |||||| ||||| || | ||||||||||| || || || || |||||||||||
Sbjct 78001 GATTCAACCTCAAGAGTGATAGTCTTTCCGGTAAGAGTCTTGACGAAAATCTGCAT 77946
Score = 141 bits (156), Expect = 3e-28
Identities = 170/231 (74%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566
||||||||| || | | | || ||||| ||||| ||||| ||||| ||||| |||||
Sbjct 77948 CATACCACCTCGGAGACGCAAGACGAGATGGAGAGTGGACTCCTTTTGGATATTGTAATC 77889
Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626
|| | ||||| || ||||||||||| ||||| || || || | || ||||| |||||
Sbjct 77888 GGAAAGAGTTCGGCCGTCTTCAAGTTGCTTTCCGGCGAAAATCAATCGCTGCTGGTCAGG 77829
Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686
||| || || || || || || || || || || ||||| || || | ||| | |||
Sbjct 77828 AGGGATACCCTCCTTGTCTTGGATCTTGGCCTTGACATTGTCGATGGTATCGCTCGATTC 77769
Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737
|||||||| |||| || || ||||| || ||||| || || || |||||
Sbjct 77768 GACTTCAAGGGTAATGGTTTTGCCGGTGAGGGTTTTGACGAAGATTTGCAT 77718
Score = 114 bits (126), Expect = 4e-20
Identities = 120/158 (76%), Gaps = 0/158 (0%)
Strand=Plus/Minus
Query 140580 CCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCT 140639
||||||||||| || || ||||||||||| | |||||||| |||||||| || || ||
Sbjct 77596 CCATCTTCAAGCTGCTTACCAGCAAAGATCAATCGTTGCTGGTCAGGAGGGATACCCTCC 77537
Query 140640 TTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTA 140699
|| ||||| || || || || ||||| || || | || || | || |||||||| ||
Sbjct 77536 TTGTCCTGGATCTTGGCCTTGACATTGTCGATGGTGTCGGAAGACTCCACTTCAAGAGTG 77477
Query 140700 ACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737
| ||||| ||||| || || || || ||||| |||||
Sbjct 77476 ATAGTCTTACCGGTGAGAGTCTTGACGAAAATTTGCAT 77439
>seq284
Length=57735
Score = 147 bits (162), Expect = 7e-30
Identities = 254/369 (69%), Gaps = 0/369 (0%)
Strand=Plus/Minus
Query 349532 CCCGAAGAAATTTCATCAATGGTTTTAGTTAAAATGAAGGAAATTGCTGAAGCATATTTA 349591
|| ||||| ||||| || |||||| | ||| |||||||| | |||||| || || |
Sbjct 988 CCTGAAGAGATTTCTTCCATGGTTCTTACTAAGATGAAGGAGACTGCTGAGGCTTACCTC 929
Query 349592 GGTGAAACAGTAACTGATGCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGT 349651
|||| || || | | || ||| |||| || || ||||| || || || | || |||
Sbjct 928 GGTGGCACCGTCTCCAAGGCCGTTGTTACCGTCCCCGCCTACTTCAACGACTCTCAACGT 869
Query 349652 TCTGCAACAAAAGATGCTGGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAA 349711
|| || || || ||||| |||||| || | |||| || | || || || ||
Sbjct 868 CAGGCTACCAAGGACGCTGGTGCCATTGCCGGTCTCGATGTCCTCCGTATCATCAACGAG 809
Query 349712 CCCACTGCTGCAGCAATTGCATATGGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATT 349771
|| ||||| || || || || || || ||||| || | | ||| || || || ||
Sbjct 808 CCTACTGCCGCTGCTATCGCTTACGGTCTTGACAAGAAGTCTGAGGGCGAGAAGAACGTT 749
Query 349772 CTTATTTTTGATTTAGGTGGTGGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGA 349831
| || || || | |||||||||||||| || || || || | || |||| |||||
Sbjct 748 TTGATCTTCGACCTTGGTGGTGGTACTTTCGACGTCTCTCTTTTGACTATTGAGGAGGGT 689
Query 349832 ATTTTTGAAGTTAAAGCAACTGCTGGTGATACACATCTTGGTGGAGAAGATTTTGATAAT 349891
|| || || || || || || |||||||| || || |||||||| || || ||||| ||
Sbjct 688 ATCTTCGAGGTCAAGGCTACCGCTGGTGACACTCACCTTGGTGGTGAGGACTTTGACAAC 629
Query 349892 CGTCTCGTT 349900
|| || |||
Sbjct 628 CGACTTGTT 620
>seq281
Length=178094
Score = 136 bits (150), Expect = 1e-26
Identities = 251/368 (68%), Gaps = 0/368 (0%)
Strand=Plus/Plus
Query 349532 CCCGAAGAAATTTCATCAATGGTTTTAGTTAAAATGAAGGAAATTGCTGAAGCATATTTA 349591
||||||||||| || || ||||| | | || |||||||| | |||||| || || |
Sbjct 177113 CCCGAAGAAATCTCTTCCATGGTCCTTATCAAGATGAAGGAGACTGCTGAGGCTTACCTT 177172
Query 349592 GGTGAAACAGTAACTGATGCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGT 349651
|||| || || | | || ||| | || || || ||||| || || || | || |||
Sbjct 177173 GGTGGCACCGTCTCCAAGGCCGTTGTCACCGTCCCCGCCTACTTCAACGACTCTCAACGT 177232
Query 349652 TCTGCAACAAAAGATGCTGGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAA 349711
|| || || || ||||| |||||| || | |||| || | || || || ||
Sbjct 177233 CAGGCTACCAAGGACGCTGGTGCCATTGCCGGTCTCGATGTCCTCCGTATCATCAACGAG 177292
Query 349712 CCCACTGCTGCAGCAATTGCATATGGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATT 349771
|| ||||| || || || || || || ||||| || | | || || || || ||
Sbjct 177293 CCTACTGCCGCTGCTATCGCTTACGGTCTTGACAAGAAGTCCGAGGGCGAGAAGAACGTT 177352
Query 349772 CTTATTTTTGATTTAGGTGGTGGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGA 349831
| || || || | |||||||||||||| || || || || | || |||| |||||
Sbjct 177353 TTGATCTTCGACCTTGGTGGTGGTACTTTCGACGTCTCTCTTTTGACTATTGAGGAGGGT 177412
Query 349832 ATTTTTGAAGTTAAAGCAACTGCTGGTGATACACATCTTGGTGGAGAAGATTTTGATAAT 349891
|| || || || || || || |||||||| || || |||||||| || || ||||| ||
Sbjct 177413 ATCTTCGAGGTCAAGGCTACCGCTGGTGACACTCACCTTGGTGGTGAGGACTTTGACAAC 177472
Query 349892 CGTCTCGT 349899
|| || ||
Sbjct 177473 CGACTTGT 177480
>seq35
Length=33713
Score = 91.5 bits (100), Expect = 4e-13
Identities = 184/271 (68%), Gaps = 4/271 (1%)
Strand=Plus/Plus
Query 349622 GTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCATTGCG 349681
|| || ||||| || || || | |||||| || || || || || || ||||||
Sbjct 14793 GTTCCTGCCTACTTCAACGACTCTCAGCGTCTCGCCACTAAGGACGCCGGTGCCATTGCC 14852
Query 349682 GGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATGGGCTT 349741
|| | | || || | || || || ||||| |||||||| || ||||| || || |||
Sbjct 14853 GGTCTTGAGGTGCTCCGTATTATCAACGAACCTACTGCTGCCGCTATTGCCTACGGTCTT 14912
Query 349742 GATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGTACTTTT 349801
|| | | || || | || ||| | || || || || || ||||||||||||||
Sbjct 14913 GACGAGAAGACCGAGGAGGAGCGAAACGTCCTCATCTTCGACTTGGGTGGTGGTACTTTC 14972
Query 349802 GATGTATCACTACTAACACTTGAAG--AGGGAATTTTTGAAGTTAAAGCAACTGCTGGTG 349859
||||| || || || || || | | | || | || || || || ||||||||||
Sbjct 14973 GATGTCTCTCTTCTTACCATTCAGGGCAAGG--TCTTCTCTGTCAAGGCCACTGCTGGTG 15030
Query 349860 ATACACATCTTGGTGGAGAAGATTTTGATAA 349890
| || ||||||||||| || || || || ||
Sbjct 15031 ACACTCATCTTGGTGGTGAGGACTTCGACAA 15061
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1515244479345333
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