Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022221
35.1_202017-07-20] 511 sequences; 18,560,305 total letters
Query= NC_031465.1
Length=360610
Score E
Sequences producing significant alignments: (Bits) Value
seq324 105 2e-17
>seq324
Length=79723
Score = 105 bits (116), Expect = 2e-17
Identities = 140/193 (73%), Gaps = 6/193 (3%)
Strand=Plus/Minus
Query 151895 GACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTC 151954
||| ||||| ||||| ||||| ||||| || |||||||||| | ||||| ||||||||
Sbjct 78715 GACGAGATGGAGAGTGGACTCCTTTTGAATATTGTAATCGGAAAGAGTTCGGCCATCTTC 78656
Query 151955 TAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTG 152014
|| ||| ||||||||||| || | ||||| || | | ||| || ||||| |||||
Sbjct 78655 AAGTTGTTTTCCGGCGAAGATGAGTCGTTGCTGATCAGGGGGGATACCCTCCTTGTCTTG 78596
Query 152015 AATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTC---TCTACTTCAAGAGTAATAGT 152071
|| || |||||| | || | | | || ||| || ||||||||||| || ||
Sbjct 78595 GATCTTGGCCTTGACATTGTCGATGGTATC---GCTCGATTCGACTTCAAGAGTGATTGT 78539
Query 152072 TTTGCCCGTGAGA 152084
|| ||||| |||
Sbjct 78538 CTTACCCGTAAGA 78526
Score = 100 bits (110), Expect = 7e-16
Identities = 150/213 (70%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951
||| ||||| ||||| ||||| || |||||||||||||| |||| | ||| | |||||
Sbjct 78437 GAGAACAAGGTGAAGGGTAGATTCCTTTTGGATGTTGTAGTCGGAAAGAGTACGACCATC 78378
Query 151952 TTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTC 152011
|| || ||| || || || || | | ||||| || | | || |||||||| ||
Sbjct 78377 CTCAAGTTGTTTACCAGCAAAAATCAATCGTTGCTGATCAGGAGGAATACCTTCCTTGTC 78318
Query 152012 TTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGT 152071
||||| || || || | || | |||| || ||| ||||| ||||| |||||
Sbjct 78317 CTGAATCTTCGCCTTAACGTTGTCGATAGTGTCAGACGACTCGACTTCGAGAGTGATAGT 78258
Query 152072 TTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104
|| || || | |||||| || |||| ||||||
Sbjct 78257 CTTTCCGGTCAAAGTCTTGACAAAGATCTGCAT 78225
Score = 96.9 bits (106), Expect = 8e-15
Identities = 128/178 (72%), Gaps = 0/178 (0%)
Strand=Plus/Minus
Query 151927 TGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCT 151986
|||| |||| | ||| || |||||||| || || || || ||||| | | ||||
Sbjct 77616 TGTAGTCGGAGAGAGTCCTGCCATCTTCAAGCTGCTTACCAGCAAAGATCAATCGTTGCT 77557
Query 151987 GGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTG 152046
|||| | | ||| || ||||| || || || || |||||| | || | | |||| |
Sbjct 77556 GGTCAGGAGGGATACCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCGATGGTGTCGG 77497
Query 152047 AACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104
|| ||| ||||||||||| ||||| || || ||||||||||| ||||| | |||||
Sbjct 77496 AAGACTCCACTTCAAGAGTGATAGTCTTACCGGTGAGAGTCTTGACGAAAATTTGCAT 77439
Score = 95.1 bits (104), Expect = 3e-14
Identities = 130/180 (72%), Gaps = 4/180 (2%)
Strand=Plus/Minus
Query 151927 TGTAATCGGCTAAAGTTCTCCCATCTTCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTG 151984
||||||| | ||||||| ||||| || || ||||| ||||||||||| | | ||
Sbjct 78123 TGTAATCAGACAAAGTTCGACCATCCTCCAGTTGCTTT--CCGGCGAAGATCAATCGTTG 78066
Query 151985 CTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTC 152044
||||| | | ||| || ||||| || ||||| || |||||| | || | | ||||
Sbjct 78065 TTGGTCAGGAGGGATACCCTCCTTGTCCTGAATCTTCGCCTTGACATTGTCAATGGTGTC 78006
Query 152045 TGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104
|| || || |||||||| ||||| || || || |||||||| ||||| | ||||||
Sbjct 78005 AGAGGATTCAACCTCAAGAGTGATAGTCTTTCCGGTAAGAGTCTTGACGAAAATCTGCAT 77946
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1153813245718881
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |