Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022221 45.1_202017-07-20] 511 sequences; 18,557,031 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq319 140 5e-28 seq104 127 3e-24 seq485 86.0 9e-12 >seq319 Length=79733 Score = 140 bits (154), Expect = 5e-28 Identities = 183/253 (72%), Gaps = 3/253 (1%) Strand=Plus/Plus Query 49959 ACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAG 50018 ||| || || ||| ||| ||||||||||||| | || || ||||| || || || || Sbjct 63541 ACAGGCAAAGTCGGTGTGGAGACCCTCGTCTCGAGAGATGAGCTCGTTAGAGAAGGTAAG 63600 Query 50019 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAA 50078 || ||||| || || ||||| |||||||| || |||||||| || || ||||| ||||| Sbjct 63601 ACCAGGCATGAGACCTCGCTTCTTAAGCCAGAAGATGGACGCGAAAGAACCAGAGAAGAA 63660 Query 50079 GATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCGCT---GTCATG 50135 ||| || || || || ||||| |||| |||| ||| || ||| | | |||| Sbjct 63661 GATACCCTCCACGGCAGCAAAAGCAATGAGTCGCTCGCCGAAACAAGATTTTTGGTCAGA 63720 Query 50136 TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATT 50195 ||||| ||||||| |||||||||||| | |||||| || || || || || | Sbjct 63721 GATCCATCGAAGAGCCCAGTCGGCCTTCTTTCGGATACAAGGAATGGTGTCCATAGCGTC 63780 Query 50196 AAAGAGATAGTTT 50208 |||||| ||||| Sbjct 63781 AAAGAGGAAGTTT 63793 >seq104 Length=112745 Score = 127 bits (140), Expect = 3e-24 Identities = 490/775 (63%), Gaps = 55/775 (7%) Strand=Plus/Minus Query 79860 TTCGAACTCGTCTCCCCAAACATCGTCTAATCCAGGACATTCGTCAGGACACATCAACGA 79919 ||| || || || || |||| ||| | | |||||| || ||| | |||||||| | | Sbjct 98835 TTCAAATTCTTCACCGTAAACGTCGGCAAGTCCAGGGCACTCGGCGGGACACATAAGAGT 98776 Query 79920 CCACTCTCCATCATCCTTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGC-TATAA 79978 ||| || ||||| | || || ||||| || ||||| | ||||| || || || || Sbjct 98775 CCAATCCCCATCGGATTCGACACGCTTCATGAAAAGATCGGAGATCCAGAGGGCGTAGAA 98716 Query 79979 ATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTT-TTAAGATCGAGGAACGCC 80037 | ||||| | | || |||||| || || ||||| ||||| || | ||| | Sbjct 98715 A-AGATCACGAGCTCGTACCTCCTCCTTACCATGGTTCTTCCTTAAG-TCAATGAAGTCA 98658 Query 80038 ATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGTCGTTTGTTTCCT 80097 | | ||||| ||||| || || | || ||||| | | || || || ||||| || Sbjct 98657 AATACATCAGCGTGCCAAGGCTCAAGATAGATGGCGAAGGCACCAGGACGCTTGTTACCA 98598 Query 80098 CCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTG 80157 || ||||| | ||||| ||| ||| | ||| ||| | ||| ||||| || || ||| Sbjct 98597 CCTTGATCAACGTATCGAGCTGTGGCGTCGTAAGCTCGGAGCATAGGAATGATGCCGTTG 98538 Query 80158 GATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAAT-TGATAG 80216 || ||||||||| |||| || ||| || | ||||| ||||| ||| ||| || Sbjct 98537 GAGTAACCATTGGTACCGGCAATGTAGGAGCCCTTCGCACGGATATTGTGAATGTGA-AG 98479 Query 80217 ACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCC 80276 ||| || || || || | || ||||| || || || | ||||| ||||| || Sbjct 98478 ACCAATACCACCGGCAGTCTTGGAGATCTGAGCACAGGTCTTGAGAGTATCGTAGATACC 98419 Query 80277 CTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGT 80336 || ||| ||||| ||||| | || || || ||||||||| | || ||| Sbjct 98418 ATCAATGGAGTCATCCTTCATGGCCACGAGGAAGCATGATGACATTTGGGGTCGGGGAGT 98359 Query 80337 TCCCGCATTAAATA---------------------AG----------------------- 80352 || || || || | || Sbjct 98358 ACCGGCGTTGAAAAGCTGTTATACTTGTCAGCAACAGACCTTTCATAATCGGTTGAAAAC 98299 Query 80353 -----GTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAG 80407 ||||| ||||| || || || | | ||||||| ||||| || ||||| || Sbjct 98298 TTACAGTAGGGGAAGCATGGGTGAAATACCTCTCAGACATGAGATTATAGGTCTCGATCA 98239 Query 80408 CTGATTCTATATCCCATTGATGAATTCCTACCGCGACACGCATTAACATGTGCTGAGGTC 80467 || || || | | ||| || || || ||||| ||||| | |||||||||||| | Sbjct 98238 CTTTGTCAATGTTGGAACCATGGATACCAACGGCGACTCGCATGATCATGTGCTGAGGGC 98179 Query 80468 TTTCAACGATCTTGTTATTTATTTTCAACAAGTAAGATTTTTCCAAAGTTTTAAAACCAA 80527 || || |||||| ||| || | | | ||| ||| | || | ||| || ||||| | Sbjct 98178 GCTCGACAATCTTGCCATTAATCCTGAGAAGGTATGATCTCTCAAGAGTCTTGAAACCGA 98119 Query 80528 AATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGTTTATCCTT 80582 | |||||||| | |||||||| || || |||||| | |||| ||| ||||||| Sbjct 98118 AGTAGTTGTAGGCAAAGTCTCTGTCATAGATAATAGCAGAGTCGAGAATATCCTT 98064 >seq485 Length=235429 Score = 86.0 bits (94), Expect = 9e-12 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 49975 TGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCA 50034 |||| ||||| || ||||| || | ||||| ||||| || ||||| ||||| | || Sbjct 198897 TGCATCCCCTCATCCCTACTGATCAACTCGTTCGAAAATGTCAGTCCAGGCATCAACCCT 198838 Query 50035 CGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCG 50094 | ||| || | ||| || || | ||||| |||||||||||||| || ||||| || Sbjct 198837 CTCTTCTTTAACCAGAAGATTGCAGCAAAAGACCCAGAAAAGAAAATGCCTTCCACGCAT 198778 Query 50095 GCAAAGGCAACAAGTCT 50111 ||||| || || ||||| Sbjct 198777 GCAAAAGCCACCAGTCT 198761 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718264212058040