Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022221
45.1_202017-07-20] 511 sequences; 18,557,031 total letters
Query= NC_014765.1
Length=198519
Score E
Sequences producing significant alignments: (Bits) Value
seq266 167 3e-36
seq104 129 7e-25
seq46 123 3e-23
seq270 91.5 2e-13
seq57 84.2 3e-11
>seq266
Length=177856
Score = 167 bits (184), Expect = 3e-36
Identities = 251/354 (71%), Gaps = 2/354 (1%)
Strand=Plus/Minus
Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516
|| || || |||||||| | ||| || || || ||||| || ||||| || ||||||||
Sbjct 177569 TCAAAGTCCTCACCACCAAGGTGAGTGTCACCAGCGGTAGCCTTGACCTCGAAGATACCC 177510
Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576
| ||||| | || | || || || || ||||||||||| ||||| || || | |||
Sbjct 177509 TCCTCAATAGTCAAAAGAGAGACGTCGAAAGTACCACCACCAAGGTCGAAGATCAAAACG 177450
Query 7577 TTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCA 7636
||| | ||| | || ||||| || |||||||| |||||||| || || || || ||
Sbjct 177449 TTCTTCTCGCCCTCGGACTTCTTGTCAAGACCGTAAGCGATAGCAGCGGCAGTAGGCTCG 177390
Query 7637 TTAATAATAC-GAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCG 7695
|| || |||| || |||| | || || ||||| | | || || || || || || ||
Sbjct 177389 TTGATGATACGGAGGACA-TCGAGACCGGCAATGGCACCAGCGTCCTTGGTAGCCTGACG 177331
Query 7696 TTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAG 7755
||| || ||||| |||||||| ||||| || || || || | | ||| | ||| ||
Sbjct 177330 TTGAGAGTCGTTGAAGTAGGCGGGGACGGTGACAACGGCCTTGGAGACGGTGCCACCAAG 177271
Query 7756 ATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTC 7809
|| | || || | || ||||| ||| |||| ||||| || || || |||||
Sbjct 177270 GTAAGCCTCAGCAGTCTCCTTCATCTTGATAAGGACCATGGAAGAGATTTCTTC 177217
Score = 93.3 bits (102), Expect = 5e-14
Identities = 141/200 (71%), Gaps = 3/200 (2%)
Strand=Plus/Minus
Query 7877 ATAACCTTATACGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAACTTTCTT 7936
|| ||||| | | ||| | ||||| ||| | || |||| ||| ||||||||
Sbjct 177099 ATGACCTTGAAAGGCCAGTGCTTCATGTCGGCCTGAACCTCAGCATCCTCAAACTTTCGG 177040
Query 7937 CCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTC 7996
|| || | ||||| || |||||||| ||||| | ||||||||||| ||||||||
Sbjct 177039 CCAATCAATCGCTTGGCGTCAAAAACAGTGTTGTAAGGGTTCATGGCGACCTGGTTCTTG 176980
Query 7997 GCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGGGTCGTT 8056
|| ||||| ||||| | || || | || | || |||||||| || || || |||
Sbjct 176979 GCAGCGTCACCGATCAATCGCTC---AGAGTCGTTGAAAGCGACGTAAGAGGGAGTGGTT 176923
Query 8057 CGATTCCCTTGGTCGTTCGC 8076
|| || || |||||||||||
Sbjct 176922 CGGTTACCCTGGTCGTTCGC 176903
>seq104
Length=112745
Score = 129 bits (142), Expect = 7e-25
Identities = 703/1115 (63%), Gaps = 23/1115 (2%)
Strand=Plus/Minus
Query 104870 CCCACATATCGAATTGAAGAATACCTTTACTAAACGGTGACCCCTTAAACGTTTCATAAG 104929
||||||| ||| | ||||| ||||| ||| | || || || | | | |||||| |
Sbjct 99448 CCCACATGTCGTACTGAAGGATACCCTTAGAGATGGGAGAACCTTCGTAAGATTCATAGG 99389
Query 104930 GACCGTACATTTCGGCAAGTTCACACGACGATTCGAGTGATGCGTGGTAGATAGTTTCGA 104989
||| || ||||||||||| || |||| || || | |||||||| || || ||||
Sbjct 99388 TACCAAACTCCTCGGCAAGTTCGCATGACGCCTCAAGCGCCGCGTGGTATATCGTCTCGA 99329
Query 104990 ATATATCAATGTTGAGTTTTCTCGATTCTTCTGAACCGAATGTCATTCTTAACATGATAA 105049
| || | || ||||||| || | || | || |||| | ||| | | || |
Sbjct 99328 AGATCTGGATATTGAGTTCCCTAGCCTCAGCGGAGTCGAACGGCATGCGAAGGGCCATGA 99269
Query 105050 ACACGTCAGCGAGACCCTGAACACCAATACCGATGGGTCTGTGACGCATATTTGAACGTT 105109
| |||| || |||||||| ||||||| ||| | || | || ||||| || || |||
Sbjct 99268 AAGCGTCGGCAAGACCCTGGACACCAAGACCAACAGGCCGATGGCGCATGTTGGA--GTT 99211
Query 105110 TCCCGTTTTCGGT--TGGGTAAAAGTTTTTATCAATAACCTTGTTTAAGTTACGTGTAAC 105167
| | | || ||| || |||| || || ||| | ||| ||||||
Sbjct 99210 GCGGGCCTCAGGCACTGGATAGTAGTTACGGGTGATTACAGTGTCAAGGTTCTTTGTAAC 99151
Query 105168 CATTTTCGTAA-CACGATGTAACTCTTCATGGT--TAAACTCGTTCTTCTCGACATCAAC 105224
| || |||| | || || | || || || || || || ||| | || ||
Sbjct 99150 AACCTTGGTAATCTCG-TGCAGCTTTTTGAAGTCATAGACGCGACGTTCCAGG--TCTAC 99094
Query 105225 GTATTTTGGTAACGCGATTGATGCGAGATTACATACGGCGGTTTCTTCCTTATCCGTAAA 105284
| | || | || | || || |||||||| || || ||| || | | | |
Sbjct 99093 GAAGGCAGGAAGAGCAAGAGAAGCAAGATTACAGACAGCAACTTCATCAGGAGAAGAATA 99034
Query 105285 CTCCAGAATTTCTGTACACAAATTTGATGATTTAATCGTACCAACGTGTTTATGGTTCGA 105344
||||| ||||| ||||| | || ||||| || ||||||| ||| || ||||| ||
Sbjct 99033 CTCCATGATTTCAGTACAGAGGTTACTGGATTTGATGGTACCAAGGTGCTTTTGGTTGGA 98974
Query 105345 CTTTTCATTACACGCGTCTTTGTAAAGCATATATGGGGTTCCCGTTTCACTTTGGGATTT 105404
||| || || || ||||| || || ||| || || || |||| | |
Sbjct 98973 CTTGGAGTTGGCAGCATCCTTGTAGCAGATGTAAGGGACACCAGTCTCGGTTTGAGCCTC 98914
Query 105405 AATAATTGCTTTCCAAATCTCCGAAGCTGGTACAACTTTAGTTGCGATACCTTCAGATTC 105464
| || || ||||| || | ||| | | ||| || | | || | ||
Sbjct 98913 GAGGATGGCGAACCAAAGCTTCTGGGCTTTGATAGTTTTCCTTCCCTTGCCCTGCCTCTC 98854
Query 105465 GTATTTCTCGTAAAGATCTTCAAACTCTTTACCGTACACGTCTGAAAGACCCTTTGCCTG 105524
||| |||| ||||| | |||||| |||| |||||| ||||| | ||| || ||
Sbjct 98853 GTAGCTCTCATAAAGCTTTTCAAATTCTTCACCGTAAACGTCGGCAAGTCCAGGGCACTC 98794
Query 105525 ATCAGGACAAAACAATGACCAATTACCATCGGATTCAACGCGTTTCATGAACAAATCTGG 105584
| ||||| | | | ||||| ||||||||||| || || |||||||| | ||| |
Sbjct 98793 GGCGGGACACATAAGAGTCCAATCCCCATCGGATTCGACACGCTTCATGAAAAGATCGGA 98734
Query 105585 AATCCACATGGCTGAAAAGAGGTCTCGACACCTCG--CCTCTTCATCACCTTGATTCAAA 105642
||||| | ||| | || || || ||| |||| |||| || | ||| || |||
Sbjct 98733 GATCCAGAGGGCGTAGAAAAGATCACGAG--CTCGTACCTCCTCCTTACCATGGTTCTTC 98676
Query 105643 CGAATTTCGAGAAAATCGAGAATATCGGCGTGCCATGGTTCTAAATAGACTGCAATAGAC 105702
| | || | || || | | ||| |||||||| || || | ||||| || | |
Sbjct 98675 CTTAAGTCAATGAAGTCAAATACATCAGCGTGCCAAGGCTCAAGATAGATGGCGAAGGCA 98616
Query 105703 CCTTTACGACGC------CCCGCTTGATTGACATATCTTGCGGTTGAGTTATACACTCGT 105756
|| | ||||| || |||||| || |||| || || | || || ||||
Sbjct 98615 CC---AGGACGCTTGTTACCACCTTGATCAACGTATCGAGCTGTGGCGTCGTAAGCTCGG 98559
Query 105757 AACATTGGAATAATACCATCGGATGTTCCATTTGTTCCACGAATATGTGATTTATTTGCA 105816
| ||| ||||| || || | ||| ||||| || || ||| | || || |||
Sbjct 98558 AGCATAGGAATGATGCCGTTGGAGTAACCATTGGTACCGGCAATGTAGGAGCCCTTCGCA 98499
Query 105817 CGTACATCGTGAACGTGTAACCCAATACCCCCAGCCCACTTACTGATACGCGCACACTCT 105876
|| | || ||||| ||| | |||||||| || || ||| ||| | |||||
Sbjct 98498 CGGATATTGTGAATGTGAAGACCAATACCACCGGCAGTCTTGGAGATCTGAGCACAGGTC 98439
Query 105877 TTTACTGTATCGTAAATACCGTCGATACTATCTTCCTTATTCGCAATCAGGAAACACGAT 105936
|| | |||||||| ||||| || || || ||||| | || | ||||| || |||
Sbjct 98438 TTGAGAGTATCGTAGATACCATCAATGGAGTCATCCTTCATGGCCACGAGGAAGCATGAT 98379
Query 105937 GACATTTGTGGTCTGGGTGTACCAGCATTGAACAG 105971
|||||||| |||| ||| ||||| || ||||| ||
Sbjct 98378 GACATTTGGGGTCGGGGAGTACCGGCGTTGAAAAG 98344
>seq46
Length=33740
Score = 123 bits (136), Expect = 3e-23
Identities = 267/395 (68%), Gaps = 6/395 (2%)
Strand=Plus/Minus
Query 7331 GAAGATAACGTTCGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGG 7390
||||| | |||||||| || |||||||| || | || || || || | ||||| | |
Sbjct 15232 GAAGAGAGAGTTCGCTTAGCACGCTCACAAGCAGATCTCAATCGTCGCAAAGCACGGGCG 15173
Query 7391 TTACCGGAAATATCTTTCTTATGTTTACGTTTAAACTCTTCAGAGAAGTGTCGAAGGAGT 7450
| | || || || ||| || | || ||||| | |||||| ||||||
Sbjct 15172 TCGTCAGAGATGTCAAGCTTGGTCTTCCTCTTGAACTCAGCCTTGAAGTGCTCAAGGAGG 15113
Query 7451 CTCGAATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAG 7510
| ||||| || |||||||| | || || || || || || || ||||| |||
Sbjct 15112 TTGTTGTCGAAGTCCTCACCACCAAGATGAGTGTCACCAGCAGTGGCCTTGACAGAGAAG 15053
Query 7511 ATACCT--CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAA 7568
| ||| || | |||| | | | || ||||| || ||||||||||||| ||| || |
Sbjct 15052 A--CCTTGCCCTGAATGGTAAGAAGAGAGACATCGAAAGTACCACCACCCAAGTCGAAGA 14995
Query 7569 TGAGTACGTTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCG 7628
|||| ||||| || || || | |||| || |||||||| || ||||| || || |
Sbjct 14994 TGAGGACGTTTCGCTCCTCCTCGGTCTTCTCGTCAAGACCGTAGGCAATAGCGGCAGCAG 14935
Query 7629 TTGGTTCATTAATAATACGAAGACAGTTC-AGGCCAGCAATAGTTGCCGCATCTTTCGTC 7687
| ||||| || |||||||| || || || || || ||||| | | || || || ||
Sbjct 14934 TAGGTTCGTTGATAATACGGAG-CACCTCAAGACCGGCAATGGCACCGGCGTCCTTAGTG 14876
Query 7688 GCTTGTCGTTGCGAATCGTTAAAGTAGGCCGGGAC 7722
|| | || || || ||||| |||||||| || ||
Sbjct 14875 GCGAGACGCTGAGAGTCGTTGAAGTAGGCAGGAAC 14841
>seq270
Length=56921
Score = 91.5 bits (100), Expect = 2e-13
Identities = 71/85 (84%), Gaps = 0/85 (0%)
Strand=Plus/Plus
Query 8076 CAATAATTTCTACGCGGTCGTTTTGCCAGACGCCGACGCACGAATACGTTGTTCCTAAAT 8135
||||||||||||| |||||||||||||||||| | || || ||||| || || || || |
Sbjct 552 CAATAATTTCTACCCGGTCGTTTTGCCAGACGGCAACACATGAATAGGTAGTGCCCAAGT 611
Query 8136 CAATACCGATTGCTTGAGTCATTTT 8160
|||||||||| |||| ||||| ||
Sbjct 612 CAATACCGATAGCTTTTGTCATGTT 636
Score = 87.8 bits (96), Expect = 2e-12
Identities = 132/185 (71%), Gaps = 2/185 (1%)
Strand=Plus/Plus
Query 7631 GGTTCATTAATAATACGAAG-ACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGC 7689
|| || || || ||||| || ||| | || || ||||| | | || || || || ||
Sbjct 1 GGCTCGTTGATGATACGGAGGACA-TCGAGACCGGCAATGGCACCAGCGTCCTTGGTAGC 59
Query 7690 TTGTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTT 7749
|| ||||| || ||||| |||||||| ||||| || || || || | | ||| |
Sbjct 60 CTGACGTTGAGAGTCGTTGAAGTAGGCGGGGACGGTAACAACGGCCTTGGAGACGGTGCC 119
Query 7750 ACCGAGATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTC 7809
|||||| || | || || | || ||||| || ||||||||||| || |||||||||||
Sbjct 120 ACCGAGGTAAGCCTCAGCAGTCTCCTTCATCTTAGTAAGAACCATGGAAGAAATCTCTTC 179
Query 7810 AGCCG 7814
|| ||
Sbjct 180 AGGCG 184
Score = 86.0 bits (94), Expect = 8e-12
Identities = 140/201 (70%), Gaps = 3/201 (1%)
Strand=Plus/Plus
Query 7876 GATAACCTTATACGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAACTTTCT 7935
||| ||||| | | ||||| ||||| ||| | || || | || ||| || |
Sbjct 300 GATTACCTTGAAAGGCCAATGCTTCATGTCGGCCTGAACTTCGGCATCGTTAAATTTACG 359
Query 7936 TCCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTT 7995
||||| | ||||| ||||| ||||| ||||| | || ||||| || |||||||||
Sbjct 360 GCCGATCAACCGCTTAGCATCGAAAACAGTGTTGTAAGGATTCATTGCAACTTGGTTCTT 419
Query 7996 CGCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGGGTCGT 8055
||| || || |||||||| ||||| | || | || || || || ||||| || ||
Sbjct 420 CGCGGCATCACCGATAAGTCGTTC---AGAGTCATTGAAAGCAACATATGATGGTGTTGT 476
Query 8056 TCGATTCCCTTGGTCGTTCGC 8076
|||||| || || ||||| ||
Sbjct 477 TCGATTGCCCTGATCGTTGGC 497
>seq57
Length=92070
Score = 84.2 bits (92), Expect = 3e-11
Identities = 126/179 (70%), Gaps = 0/179 (0%)
Strand=Plus/Plus
Query 183338 GCGTCTTTACCACCCATGAGACGTGTACCAAATTGACCACATGGTTCGAGTAAATTAATA 183397
|||||||||||||| ||||| ||||||||||| || || || || | ||| ||
Sbjct 84270 GCGTCTTTACCACCTGCAAGACGAGTACCAAATTGGCCGTTGGGATCCAGCAGATTGATG 84329
Query 183398 TTATTCGACCCCGTAAAATTATGTGCTAATTTTACAATTGTATCTGCCAAAGAGACTTCA 183457
|| || || || || |||||||| ||||| || | |||| | |||||
Sbjct 84330 TTGTTACTGCCGACGAAGTTTTGTGCTAAGCCGACAATGGTGGAAGTCAAACTGGCTTCA 84389
Query 183458 CCGTGGTGATACGATGTTTTTTCCGAAACGTATGCGGCTAATTGCGCAACCTTCATTTC 183516
|| |||||||| | ||||| ||||||||||| |||| | || || ||||| |||||
Sbjct 84390 CCATGGTGATATGCGGTTTTCTCCGAAACGTAGCCGGCAAGCTGAGCGACCTTGATTTC 84448
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 635128743089240
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