Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022221
45.1_202017-07-20] 511 sequences; 18,557,031 total letters
Query= NC_019491.1
Length=291144
Score E
Sequences producing significant alignments: (Bits) Value
seq319 170 4e-37
seq104 102 2e-16
>seq319
Length=79733
Score = 170 bits (188), Expect = 4e-37
Identities = 184/244 (75%), Gaps = 0/244 (0%)
Strand=Plus/Plus
Query 48123 AGAGCATGCAGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGA 48182
|||| | ||||||||||| |||| | || ||||| || ||||||| |||| ||||
Sbjct 63534 AGAGGAGACAGGCAAAGTCGGTGTGGAGACCCTCGTCTCGAGAGATGAGCTCGTTAGAGA 63593
Query 48183 AGCAGAGACCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAG 48242
|| ||||||||||||| || | || || |||||||| || | ||||||||| ||||
Sbjct 63594 AGGTAAGACCAGGCATGAGACCTCGCTTCTTAAGCCAGAAGATGGACGCGAAAGAACCAG 63653
Query 48243 AGAAGAAGATGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCT 48302
|||||||||| |||||||| || || || || |||| | ||| |||||| ||| || |
Sbjct 63654 AGAAGAAGATACCCTCCACGGCAGCAAAAGCAATGAGTCGCTCGCCGAAACAAGATTTTT 63713
Query 48303 TGTCTGAGATCCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTA 48362
||| |||||||| ||| |||||||| |||||||| ||| || || || || || |
Sbjct 63714 GGTCAGAGATCCATCGAAGAGCCCAGTCGGCCTTCTTTCGGATACAAGGAATGGTGTCCA 63773
Query 48363 TGGC 48366
| ||
Sbjct 63774 TAGC 63777
>seq104
Length=112745
Score = 102 bits (112), Expect = 2e-16
Identities = 286/436 (66%), Gaps = 5/436 (1%)
Strand=Plus/Minus
Query 213531 TACTCCATGATCTCGGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGGTTT 213590
||||||||||| || || || ||||| ||| || |||||| || |||| || |||||
Sbjct 99035 TACTCCATGATTTCAGTACAGAGGTTACTGGATTTGATGGTACCAAGGTGCTTTTGGTTG 98976
Query 213591 GACTTTGCGTTGGCAGAATCCTTGTAGAGCATGTAGGGGGACCCGGTCTCTAGCTGGGAC 213650
||||| | |||||||| |||||||||| ||||| ||| || ||||| || | |
Sbjct 98975 GACTTGGAGTTGGCAGCATCCTTGTAGCAGATGTAAGGGACACCAGTCTCGGTTTGAGCC 98916
Query 213651 ACCAGTATCTGGCTCCAGAGGTACCTGGCCTTGACCACCCGCCTGACAGCTCCGGGCGTA 213710
| || || | ||| || | | ||| |||| ||| | || || |
Sbjct 98915 TCGAGGATGGCGAACCAAAGCTTCTGGGCTTTGATAGTTTTCCTTCCCTTGCCCTGCCT- 98857
Query 213711 GCCTCGTACTGTTCGTAGAGCTCGTTGAATTCGTGGCCCCAGACCCTGTCCAGTCCCGGA 213770
|||||| || || |||| | ||||| | || | || | | ||||| ||
Sbjct 98856 --CTCGTAGCTCTCATAAAGCTTTTCAAATTCTTCACCGTAAACGTCGGCAAGTCCAGGG 98799
Query 213771 CAGGATGCGGGACACATGAGGCTCCAGTCCCCGTCATCTCTGACTCTCTGCATGAACAGG 213830
|| ||||||||||| || |||| ||||| || | ||| | || |||||| ||
Sbjct 98798 CACTCGGCGGGACACATAAGAGTCCAATCCCCATCGGATTCGACACGCTTCATGAAAAGA 98739
Query 213831 TCCGGGACCCACAGCGCGGTGAACAGGTC-CCTGGTCCTCCTCTCGTCCACTCCAGAGTT 213889
|| | || ||| || ||| ||| || || | | || | | ||| ||| ||| |||
Sbjct 98738 TCGGAGATCCAGAGGGCGTAGAAAAGATCACGAGCTCGTAC-CTCCTCCTTACCATGGTT 98680
Query 213890 TTTGCGCAGATCTAGAAAGTCAAAGATGTCCGCGTGCCACGGCTCCATGTAGATGGCAAA 213949
|| | | || | |||||||| | || |||||||| ||||| | |||||||| ||
Sbjct 98679 CTTCCTTAAGTCAATGAAGTCAAATACATCAGCGTGCCAAGGCTCAAGATAGATGGCGAA 98620
Query 213950 GGCGCCCGGCCTCTTG 213965
||| || || | ||||
Sbjct 98619 GGCACCAGGACGCTTG 98604
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 931526849834240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |