Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022221 45.1_202017-07-20] 511 sequences; 18,557,031 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq270 125 5e-23 seq319 116 2e-20 seq106 87.8 1e-11 >seq270 Length=56921 Score = 125 bits (138), Expect = 5e-23 Identities = 146/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 474401 GCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACTGAAACTGAACAT 474460 ||||| || || || ||| |||||||||||||||||||| |||| | ||| |||||| Sbjct 497 GCCAACGATCAGGGCAATCGAACAACACCATCATATGTTGCTTTCAATGACTCTGAACGA 438 Query 474461 CTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAATACTATTTTTGAT 474520 ||||| || ||||| || || | |||| |||| |||||| || ||| |||| ||| Sbjct 437 CTTATCGGTGATGCCGCGAAGAACCAAGTTGCAATGAATCCTTACAACACTGTTTTCGAT 378 Query 474521 GCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAATCTGATATGCGTCAT 474580 ||||| | ||||| || ||||| ||| | ||| || || || | || ||| ||| Sbjct 377 GCTAAGCGGTTGATCGGCCGTAAATTTAACGATGCCGAAGTTCAGGCCGACATGAAGCAT 318 Query 474581 TGGCCTTTTAAGGTGAT 474597 |||||||| ||||| || Sbjct 317 TGGCCTTTCAAGGTAAT 301 >seq319 Length=79733 Score = 116 bits (128), Expect = 2e-20 Identities = 132/177 (75%), Gaps = 0/177 (0%) Strand=Plus/Minus Query 480593 ATTATAATCAGCTAGAGTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTG 480652 ||| ||||| | ||||||| | ||||||||||||||||| || ||||| | || || Sbjct 77905 ATTGTAATCGGAAAGAGTTCGGCCGTCTTCAAGTTGCTTTCCGGCGAAAATCAATCGCTG 77846 Query 480653 TTGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATC 480712 || |||||||| || || ||||||||||| ||||| |||||| || || ||||| Sbjct 77845 CTGGTCAGGAGGGATACCCTCCTTGTCTTGGATCTTGGCCTTGACATTGTCGATGGTATC 77786 Query 480713 AGTGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 | | |||||||||||| ||||| |||||||| || || ||||| ||||| Sbjct 77785 GCTCGATTCGACTTCAAGGGTAATGGTTTTGCCGGTGAGGGTTTTGACGAAGATTTG 77729 Score = 114 bits (126), Expect = 8e-20 Identities = 126/165 (76%), Gaps = 2/165 (1%) Strand=Plus/Minus Query 480606 AGAGTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGA 480665 ||||| ||| ||||||||| ||||| |||||||| || | ||||| || |||||||| Sbjct 77613 AGAGTCCTGCCATCTTCAAGCTGCTTACCAGCAAAGATCAATCGTTGCTGGTCAGGAGGG 77554 Query 480666 ATTCCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGT-GTGTGAAGT 480724 || || |||||||| || ||||| |||||| || || || || | | | | | Sbjct 77553 ATACCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCGATGGTGTCGGAAGACTCCACT 77494 Query 480725 TTCAAGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 | |||| || ||||| ||||||||||||||||| ||||||||||| Sbjct 77493 T-CAAGAGTGATAGTCTTACCGGTGAGAGTCTTGACGAAAATTTG 77450 Score = 114 bits (126), Expect = 8e-20 Identities = 129/173 (75%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 480597 TAATCAGCTAGAGTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGA 480656 ||||||| | ||||| ||| || ||||||||||| || || || | |||||||| Sbjct 78129 TAATCAGACAAAGTTCGACCATCCTCCAGTTGCTTTCCGGCGAAGATCAATCGTTGTTGG 78070 Query 480657 TCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTG 480716 |||||||| || || |||||||| |||||||| |||||| ||||| || |||| | Sbjct 78069 TCAGGAGGGATACCCTCCTTGTCCTGAATCTTCGCCTTGACATTGTCAATGGTGTCAGAG 78010 Query 480717 TGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 | | ||||| || ||||| || ||||| |||||||| |||||||| || Sbjct 78009 GATTCAACCTCAAGAGTGATAGTCTTTCCGGTAAGAGTCTTGACGAAAATCTG 77957 Score = 111 bits (122), Expect = 1e-18 Identities = 158/220 (72%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 ||| |||||||| ||||| ||||| ||| ||| || | || || || | ||||| Sbjct 78454 ACGCAGACGGAGAACAAGGTGAAGGGTAGATTCCTTTTGGATGTTGTAGTCGGAAAGAGT 78395 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 | ||| |||||||| || ||||||||||| | ||||| |||||||||||||| || Sbjct 78394 ACGACCATCCTCAAGTTGTTTACCAGCAAAAATCAATCGTTGCTGATCAGGAGGAATACC 78335 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAA 480729 ||||||||| |||||||| || || || ||||| |||| | | | ||| | Sbjct 78334 TTCCTTGTCCTGAATCTTCGCCTTAACGTTGTCGATAGTGTCAGACGACTCGA-CTTCGA 78276 Query 480730 GGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 | || ||||| || ||||| | |||||| || || || || Sbjct 78275 GAGTGATAGTCTTTCCGGTCAAAGTCTTGACAAAGATCTG 78236 Score = 95.1 bits (104), Expect = 8e-14 Identities = 121/163 (74%), Gaps = 4/163 (2%) Strand=Plus/Minus Query 480552 CGAAGACGGAGTACAAGATGAAGTGT--ACTTTCTTTAGAAACATTATAATCAGCTAGAG 480609 || ||||| | || ||||| || || ||| |||| ||| ||| ||||| | |||| Sbjct 78734 CGGAGACGCAAGACGAGATGGAGAGTGGACTC-CTTTTGAAT-ATTGTAATCGGAAAGAG 78677 Query 480610 TTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTC 480669 ||| | |||||||||||| ||||| || || || || ||||| |||||||| || || | Sbjct 78676 TTCGGCCATCTTCAAGTTGTTTTCCGGCGAAGATGAGTCGTTGCTGATCAGGGGGGATAC 78617 Query 480670 CTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATC 480712 | ||||||||||| ||||| |||||| || || ||||| Sbjct 78616 CCTCCTTGTCTTGGATCTTGGCCTTGACATTGTCGATGGTATC 78574 >seq106 Length=63080 Score = 87.8 bits (96), Expect = 1e-11 Identities = 104/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 318687 ATTTCTTACAGTACCATCATATTCCACTTTAATATCTTCTAGTATTTTAACTAATTTTCT 318746 |||||| |||||||||||||| | || || | || || | ||| || ||| |||| Sbjct 40966 ATTTCTCACAGTACCATCATAAGCAACCTTCAAGTCCTCCATCGCTTTGACCAATCTTCT 40907 Query 318747 TTGTACATAACCTGTGTCTGCAGTTTTAATAGCAGTATTAATAATACCTTCTCTTCCTGC 318806 ||| | |||||| || || ||||| || | ||| |||| ||| | |||||||| || | Sbjct 40906 TTGGATATAACCAGTCTCAGCAGTCTTGACAGCGGTATCAATCAAACCTTCTCGACCACC 40847 Query 318807 CATAACTTGGAAAAAGAATTC 318827 |||| | ||||| ||||||| Sbjct 40846 CATAGCGTGGAACCAGAATTC 40826 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3268157280730628