Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022221 45.1_202017-07-20] 511 sequences; 18,557,031 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq104 100 4e-16 seq485 89.7 7e-13 >seq104 Length=112745 Score = 100 bits (110), Expect = 4e-16 Identities = 293/449 (65%), Gaps = 2/449 (0%) Strand=Plus/Minus Query 77915 ATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAATCCAGGGCATTCATTTGGGCA 77974 ||| ||| ||||||||| || || |||| || | | ||||||||| || || || Sbjct 98844 ATAAAGCTTTTCAAATTCTTCACCGTAAACGTCGGCAAGTCCAGGGCACTCGGCGGGACA 98785 Query 77975 CATCAATGACCAGTCACCATCTTCCTTAACTCGTTTCATAAAGAGATCAGGTATCCATAG 78034 ||| | | ||| || ||||| | || || ||||| || ||||| | ||||| || Sbjct 98784 CATAAGAGTCCAATCCCCATCGGATTCGACACGCTTCATGAAAAGATCGGAGATCCAGAG 98725 Query 78035 AGCAATAAATAGATCTCGGGTTCTATGTTCTTCATTTCCTGTATTCTTT-TTAAGATCGA 78093 || || ||||| || | || || || || || ||||| ||||| || | Sbjct 98724 GGCGTAGAAAAGATCACGAGCTCGTACCTCCTCCTTACCATGGTTCTTCCTTAAG-TCAA 98666 Query 78094 GAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATTGCCATAACTCCAGGTCGTT 78153 || || | | ||||| ||||| || || ||||| || || | | ||||| || | Sbjct 98665 TGAAGTCAAATACATCAGCGTGCCAAGGCTCAAGATAGATGGCGAAGGCACCAGGACGCT 98606 Query 78154 TATTACCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAA 78213 | ||||| || ||||| | |||| || ||| | ||| ||| | ||| ||||| | Sbjct 98605 TGTTACCACCTTGATCAACGTATCGAGCTGTGGCGTCGTAAGCTCGGAGCATAGGAATGA 98546 Query 78214 TACCGTTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAA 78273 | ||||| || ||||| || || | ||| || || | || || ||||| || Sbjct 98545 TGCCGTTGGAGTAACCATTGGTACCGGCAATGTAGGAGCCCTTCGCACGGATATTGTGAA 98486 Query 78274 TGGATATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGT 78333 || | || || || || || |||| || || |||| || || | ||||||| Sbjct 98485 TGTGAAGACCAATACCACCGGCAGTCTTGGAGATCTGAGCACAGGTCTTGAGAGTATCGT 98426 Query 78334 AGATACCCTCTATACTGTCATCCATCATG 78362 ||||||| || || ||||||| ||||| Sbjct 98425 AGATACCATCAATGGAGTCATCCTTCATG 98397 >seq485 Length=235429 Score = 89.7 bits (98), Expect = 7e-13 Identities = 93/122 (76%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 48162 CCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTT 48221 || ||||| ||||| || || ||||| |||||||| || || ||||| | || | || Sbjct 198891 CCCTCATCCCTACTGATCAACTCGTTCGAAAATGTCAGTCCAGGCATCAACCCTCTCTTC 198832 Query 48222 TTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAAT 48281 || | ||| || ||||| || ||||| ||||||||||| |||||||| ||| ||||| Sbjct 198831 TTTAACCAGAAGATTGCAGCAAAAGACCCAGAAAAGAAAATGCCTTCCACGCATGCAAAA 198772 Query 48282 GC 48283 || Sbjct 198771 GC 198770 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694664362803040