Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022221
55.1_202017-07-20] 587 sequences; 18,505,623 total letters
Query= NC_002816.1
Length=123500
Score E
Sequences producing significant alignments: (Bits) Value
seq449 91.5 1e-13
>seq449
Length=79778
Score = 91.5 bits (100), Expect = 1e-13
Identities = 140/200 (70%), Gaps = 0/200 (0%)
Strand=Plus/Minus
Query 45145 CTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAA 45204
|||||| || |||||||||||| || ||| | || ||||||||||| || || ||
Sbjct 78465 CTCCTTTTGGATGTTGTAGTCGGAAAGAGTACGACCATCCTCCAGTTGTTTACCAGCAAA 78406
Query 45205 TATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGC 45264
||||| || || || || ||||| | ||| ||||||||| ||| || ||||||
Sbjct 78405 AATCAATCGTTGCTGATCAGGAGGAATACCTTCCTTGTCCTGAATCTTCGCCTTAACGTT 78346
Query 45265 CGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCAC 45324
| | |||| ||| || || | || || ||||| || |||| |||||| ||
Sbjct 78345 GTCGATAGTGTCAGACGACTCGACTTCAAGAGTGATAGTCTTTCCGGTCAAAGTCTTGAC 78286
Query 45325 AAAGATTTGCATGTTGCCTC 45344
|||||| ||||| |||||
Sbjct 78285 AAAGATCTGCATACCGCCTC 78266
Score = 87.8 bits (96), Expect = 1e-12
Identities = 116/161 (72%), Gaps = 0/161 (0%)
Strand=Plus/Minus
Query 45176 CGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCC 45235
||| | || |||||||| ||||||||||| ||||| || |||||||| ||||| | ||||
Sbjct 78155 CGACCATCTTCCAGTTGCTTTCCGGCGAAGATCAATCGTTGTTGGTCAGGAGGGATACCC 78096
Query 45236 TCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACG 45295
||||||||| ||| || ||| || | | | |||| || ||||| |
Sbjct 78095 TCCTTGTCCTGAATCTTCGCCTTGACATTGTCAATGGTGTCAGAGGATTCAACCTCAAGA 78036
Query 45296 GTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336
|| || ||||| || || |||||||| || || || |||||
Sbjct 78035 GTGATAGTCTTTCCGGTAAGAGTCTTGACGAAAATCTGCAT 77995
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 395072373607327
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |