Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022221 55.1_202017-07-20] 587 sequences; 18,505,623 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq449 158 2e-33 seq377 96.9 5e-15 seq185 84.2 3e-11 >seq449 Length=79778 Score = 158 bits (174), Expect = 2e-33 Identities = 233/329 (71%), Gaps = 6/329 (2%) Strand=Plus/Minus Query 125259 GAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTCGCGA---TCCG 125315 |||||| | ||| | || | |||||| || || |||| |||||| || | | Sbjct 63865 GAGAACATCCACGCCGAGACCTACTCTCTCCTCATCGACACCTACATTAAGGACACTGCT 63806 Query 125316 CAACGTAAACACATGCTCTTTAACGCAATCGACACGGTGCCGTCTATACGTAAAAAGGCT 125375 | ||| || | | |||||| |||| || ||||| | || | ||| || || ||||| Sbjct 63805 CGACGAAA---CTTCCTCTTTGACGCTATGGACACCATTCCTTGTATCCGAAAGAAGGCC 63749 Query 125376 CAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCGTACGCCGACAGACTGGTGGCA 125435 | |||| |||| |||||| |||| | || |||| | || ||| |||| | || Sbjct 63748 GACTGGGCTCTTCGATGGATCTCTGACCAAAAATCTTGTTTCGGCGAGCGACTCATTGCT 63689 Query 125436 TTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGCTCAAG 125495 || || ||||| ||||| |||||||| || ||| ||| ||| ||||||| ||||| ||| Sbjct 63688 TTTGCTGCCGTGGAGGGTATCTTCTTCTCTGGTTCTTTCGCGTCCATCTTCTGGCTTAAG 63629 Query 125496 AAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGAGGGC 125555 ||||| || |||||||| || || || | ||||||| | || |||||||||||||| Sbjct 63628 AAGCGAGGTCTCATGCCTGGTCTCACCTTCTCTAACGAGCTCATCTCTCGAGACGAGGGT 63569 Query 125556 CTACACTGTGACTTTGCCATTCTACTGTT 125584 || ||| ||||||||| ||| || || Sbjct 63568 CTCCACACCGACTTTGCCTGTCTCCTCTT 63540 >seq377 Length=14284 Score = 96.9 bits (106), Expect = 5e-15 Identities = 221/330 (67%), Gaps = 2/330 (1%) Strand=Plus/Minus Query 69884 GACAACAACCTACCTCTGTTGACGACCAAGACTGTCTTTGTCAAGGGCGTCATCGAGGAG 69943 ||||||| ||| ||||| |||||||||| ||||| | |||||||| | ||| Sbjct 9378 GACAACACCCTTCCTCTCCTGACGACCAAACGCGTCTTCCTTCGCGGCGTCATTGCCGAG 9319 Query 69944 CTCTTGTGGATGATTTCCGGATCGACCAATGCCAAAGAGCTGAGCCGAAAGGGTGTACAC 70003 || |||||| | |||| || | ||| | ||||| | ||| | |||| ||| Sbjct 9318 CTTTTGTGGTTCGTTTCTGGTTGTACCGACGCCAAGGTGCTCTCTAGTCAGGGCGTAGGG 9259 Query 70004 ATTTGGAGCGGCAACAGTAGTCGAAGCGTTT-TGGATTCGCTCGGCTTCACCGACAGACA 70062 || ||| || ||| | || | ||| || |||| | |||| || | ||||| Sbjct 9258 ATCTGGGATGGTAACGGAAG-CAAAGAATTCCTGGAGAAGGTCGGGCTCGGCCACAGAAG 9200 Query 70063 AGAGGGCGATCTGGGGCCAGTGTACGGATTCCAGTGGAGGCACTCGGGCACCAAGTATGT 70122 || || |||||||| || |||||||| ||||||||||| || | || || |||| Sbjct 9199 GGAAGGTGATCTGGGACCTGTGTACGGGTTCCAGTGGAGACATTTTGGTGCCGAGTACAC 9140 Query 70123 AGACTGCGAGACAGACTATTCGGGTCAGGGTGTTGATCAATTGCAGACAATCATTGACAC 70182 || ||| ||||||| || | || || || ||| |||| | | || ||||| Sbjct 9139 TGATGCCGACGGAGACTATAAGGACAAAGGAGTCGACCAACTGCAAAGGGTAATCGACAC 9080 Query 70183 TCTCAAGACCAATCCAACAGATAGGAGGAT 70212 |||||| ||||||||| || ||| |||| Sbjct 9079 CATCAAGAACAATCCAACTGACAGGCGGAT 9050 Score = 91.5 bits (100), Expect = 2e-13 Identities = 156/221 (71%), Gaps = 4/221 (2%) Strand=Plus/Minus Query 70301 AAATTGTCATGCTTAATGTATCAGAGGAGTGCCGACATGGGCCTCGGTGTACCCTTTAAC 70360 ||| | || ||| | ||||||||||| | ||| | ||||||||||| || || ||| Sbjct 8883 AAACTTTCTTGCCTGATGTATCAGAGATCTTGTGACTTAGGCCTCGGTGTCCCATTCAAC 8824 Query 70361 ATTGCAAGCTATTCTATGTTGACGCACATGATTGCTCACATTACCGGC-CTGAAAGCGCA 70419 ||||| || | |||| || || |||||||| | |||||||| | ||| || | || Sbjct 8823 ATTGCGTCTTACGCATTGTTAACCCATATGATTGCCCTCATTACCGACACTG-AACCACA 8765 Query 70420 CGAGTTCGTAC-ACACCATTGGCGACGCTCACGTGTATTTAAATCACATCGAGCCATTAA 70478 ||||| | | ||| || || || || || ||||| | |||| | || ||||| | Sbjct 8764 TGAGTTTATCCTACA-GATGGGAGATGCGCATGTGTACAGAGATCATGTTGAACCATTGA 8706 Query 70479 AGGTGCAACTCGAACGGGAGCCGAGACCTTTTCCCAAGCTG 70519 || |||| | ||| ||||||| ||| ||| |||||| || Sbjct 8705 AGACGCAATTGGAAAGGGAGCCTAGAGATTTCCCCAAGTTG 8665 >seq185 Length=108970 Score = 84.2 bits (92), Expect = 3e-11 Identities = 171/254 (67%), Gaps = 0/254 (0%) Strand=Plus/Plus Query 96864 CGATACGTTACACAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCT 96923 ||||||||| || || || || || || || || || | ||| |||| | || ||| Sbjct 94804 CGATACGTTGATCAAGGTGGTAACAAGCGTCCTGGTGCCTTCGCCATCTATCTTGAGCCT 94863 Query 96924 TGGCACGCGGACGTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCA 96983 |||||||| || || |||||||| || || | | || ||| ||| || |||| | Sbjct 94864 TGGCACGCTGATGTATTTGACTTCATTGACTTAAGGAAGAACCATGGTAAGGAGGAGGTA 94923 Query 96984 CGAGCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAAC 97043 ||||| | || | || || || |||||| | | ||| | ||||||||||| ||| | Sbjct 94924 CGAGCTCGTGATCTTTTCTACGCCCTCTGGATCTCCGATCTTTTCATGAAGCGTGTCGAA 94983 Query 97044 GACGGTGGCTACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGG 97103 || ||| | |||| || ||||| |||| | || || || || |||| | Sbjct 94984 TCCGATGGGGATTGGACTCTTATGTGTCCCGCCGAGTGCCCTGGACTTGCCGACGTTTAC 95043 Query 97104 GGCGAAGAGTTTGA 97117 || ||||| ||||| Sbjct 95044 GGTGAAGAATTTGA 95057 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741053762478120