Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022221
55.1_202017-07-20] 587 sequences; 18,505,623 total letters
Query= NC_005309.1
Length=359853
Score E
Sequences producing significant alignments: (Bits) Value
seq449 123 6e-23
seq5 104 5e-17
>seq449
Length=79778
Score = 123 bits (136), Expect = 6e-23
Identities = 140/188 (74%), Gaps = 0/188 (0%)
Strand=Plus/Minus
Query 104351 ACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCT 104410
|| ||||| | ||||| || || || ||||| || || || ||||||| || |||||
Sbjct 78763 ACGAGATGGAGGGTAGACTCCTTTTGGATATTGTAATCGGAAAGAGTTCGGCCATCTTCA 78704
Query 104411 AGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGA 104470
||||||||||| || || || || | || |||||||| || || || || || || ||
Sbjct 78703 AGTTGTTTTCCGGCGAAGATGAGTCGTTGCTGATCAGGGGGGATACCCTCCTTGTCTTGG 78644
Query 104471 ATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTA 104530
||||| || || || || || | ||||||||| | ||| || || || || || ||||||
Sbjct 78643 ATCTTGGCCTTGACGTTGTCGATGGTATCGCTCGATTCGACTTCAAGAGTGATTGTCTTA 78584
Query 104531 CCAGTAAG 104538
|| |||||
Sbjct 78583 CCCGTAAG 78576
Score = 122 bits (134), Expect = 2e-22
Identities = 145/197 (74%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422
||||| || || || || || ||||| || ||||| | ||| || || |||||||| |||
Sbjct 78470 GTAGACTCCTTTTGGATGTTGTAGTCGGAAAGAGTACGACCATCCTCCAGTTGTTTACCA 78411
Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482
|||||||| | | || ||||||||||| || ||||| || ||||||||||| || ||
Sbjct 78410 GCAAAAATCAATCGTTGCTGATCAGGAGGAATACCTTCCTTGTCCTGAATCTTCGCCTTA 78351
Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542
|| || || | || || | || || || || || |||||||| || || | ||
Sbjct 78350 ACGTTGTCGATAGTGTCAGACGACTCGACTTCAAGAGTGATAGTCTTTCCGGTCAAAGTC 78291
Query 104543 TTTACAAATATCTGCAT 104559
|| ||||| ||||||||
Sbjct 78290 TTGACAAAGATCTGCAT 78274
Score = 120 bits (132), Expect = 7e-22
Identities = 132/176 (75%), Gaps = 0/176 (0%)
Strand=Plus/Minus
Query 104384 TAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGA 104443
|| ||||| | ||||| ||| ||||| ||||| ||||| || || || | | |||||
Sbjct 78170 TAATCAGACAAAGTTCGACCATCTTCCAGTTGCTTTCCGGCGAAGATCAATCGTTGTTGG 78111
Query 104444 TCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTA 104503
|||||||| || || || || ||||||||||| || || ||||| || | ||| ||
Sbjct 78110 TCAGGAGGGATACCCTCCTTGTCCTGAATCTTCGCCTTGACATTGTCAATGGTGTCAGAG 78051
Query 104504 GGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559
| ||| ||||| || || |||||||| || ||||| || || || || ||||||||
Sbjct 78050 GATTCAACCTCAAGAGTGATAGTCTTTCCGGTAAGAGTCTTGACGAAAATCTGCAT 77995
Score = 118 bits (130), Expect = 2e-21
Identities = 154/212 (73%), Gaps = 6/212 (3%)
Strand=Plus/Minus
Query 104351 ACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCT 104410
|| ||||| | ||||| || || || ||||| || || || ||||||| || |||||
Sbjct 77975 ACGAGATGGAGGGTAGACTCCTTTTGGATATTGTAATCGGAAAGAGTTCGGCCATCTTCA 77916
Query 104411 AGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGA 104470
||||||||||| || || || || | || |||||||| || || || || || || ||
Sbjct 77915 AGTTGTTTTCCGGCGAAGATGAGTCGTTGCTGATCAGGGGGGATACCCTCCTTGTCTTGG 77856
Query 104471 ATCTTTGCTTTTACATTTTCTACGGTATC---GCTAGGTTCTACCTCTAGTGTAATAGTC 104527
||||| || || ||||| || | |||||| ||| ||| || || || ||||| ||
Sbjct 77855 ATCTTGGCCTTGACATTGTCGATGGTATCAGAGCT---TTCGACTTCAAGGGTAATGGTT 77799
Query 104528 TTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559
|| || || || ||||| || || || |||||
Sbjct 77798 TTGCCGGTGAGGGTTTTGACGAAGATTTGCAT 77767
Score = 102 bits (112), Expect = 2e-16
Identities = 128/176 (73%), Gaps = 0/176 (0%)
Strand=Plus/Minus
Query 104384 TAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGA 104443
||||| || ||||| || || ||||| || || || |||||||| || | | || ||
Sbjct 77663 TAGTCGGAGAGAGTCCTGCCATCTTCAAGCTGCTTACCAGCAAAGATCAATCGTTGCTGG 77604
Query 104444 TCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTA 104503
|||||||| || || || || || || ||||| || || ||||| || | ||| ||| |
Sbjct 77603 TCAGGAGGGATACCCTCCTTGTCTTGGATCTTGGCCTTGACATTGTCGATGGTGTCGGAA 77544
Query 104504 GGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559
| || || || || || ||||||||||| || || || || || || || |||||
Sbjct 77543 GACTCCACTTCAAGAGTGATAGTCTTACCGGTGAGAGTCTTGACGAAAATTTGCAT 77488
Score = 84.2 bits (92), Expect = 5e-11
Identities = 106/146 (73%), Gaps = 0/146 (0%)
Strand=Plus/Minus
Query 269139 TTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCCGCTATCTTTTGGT 269198
|||||||||| || || || ||||| ||||| || || ||||| || | ||||| |||
Sbjct 63693 TTGCTTTTGCTGCCGTGGAGGGTATCTTCTTCTCTGGTTCTTTCGCGTCCATCTTCTGGC 63634
Query 269199 TGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTGATAAGCAGGGACG 269258
| ||||| |||| || ||||| || | || ||||||||||| | || | ||||
Sbjct 63633 TTAAGAAGCGAGGTCTCATGCCTGGTCTCACCTTCTCTAACGAGCTCATCTCTCGAGACG 63574
Query 269259 AAGGTTTACACTGCGACTTCGCTTGT 269284
| ||| | ||| |||||| || |||
Sbjct 63573 AGGGTCTCCACACCGACTTTGCCTGT 63548
>seq5
Length=47339
Score = 104 bits (114), Expect = 5e-17
Identities = 98/125 (78%), Gaps = 0/125 (0%)
Strand=Plus/Plus
Query 269138 GTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCCGCTATCTTTTGG 269197
|| |||||||| || ||||| || |||||||| ||||||||||| || ||||| |||
Sbjct 13203 GTGGCTTTTGCATGCGTGGAAGGCATTTTCTTTTCTGGGTCTTTTGCTGCAATCTTCTGG 13262
Query 269198 TTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTGATAAGCAGGGAC 269257
|| ||||| ||||| | ||||| ||| | || || || ||||| ||||| ||||||||
Sbjct 13263 TTAAAGAAGAGAGGGTTGATGCCTGGACTGACATTTTCAAACGAGTTGATCAGCAGGGAT 13322
Query 269258 GAAGG 269262
|| ||
Sbjct 13323 GAGGG 13327
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1151389740404596
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |