Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022221 55.1_202017-07-20] 587 sequences; 18,505,623 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq449 152 6e-32 seq185 111 2e-19 >seq449 Length=79778 Score = 152 bits (168), Expect = 6e-32 Identities = 186/253 (74%), Gaps = 3/253 (1%) Strand=Plus/Plus Query 33303 ACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAG 33362 ||| || || ||| ||| ||||||||||||| | || || ||||| || || ||||| Sbjct 63548 ACAGGCAAAGTCGGTGTGGAGACCCTCGTCTCGAGAGATGAGCTCGTTAGAGAAGGTGAG 63607 Query 33363 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAA 33422 || ||||| || || ||||| |||||||| || ||||| ||||| || ||||| ||||| Sbjct 63608 ACCAGGCATGAGACCTCGCTTCTTAAGCCAGAAGATGGACGCGAAAGAACCAGAGAAGAA 63667 Query 33423 GATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCT---GTCATG 33479 ||| || || || |||||||| ||||| |||| ||| || ||| | | |||| Sbjct 63668 GATACCCTCCACGGCAGCAAAAGCAATGAGTCGCTCGCCGAAACAAGATTTTTGGTCAGA 63727 Query 33480 TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATT 33539 ||||| ||||||| |||||||||||| | |||||| || || || || || | Sbjct 63728 GATCCATCGAAGAGCCCAGTCGGCCTTCTTTCGGATACAAGGAATGGTGTCCATAGCGTC 63787 Query 33540 AAAGAGATAGTTT 33552 |||||| ||||| Sbjct 63788 AAAGAGGAAGTTT 63800 >seq185 Length=108970 Score = 111 bits (122), Expect = 2e-19 Identities = 594/951 (62%), Gaps = 65/951 (7%) Strand=Plus/Minus Query 63137 TTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGA 63196 ||| || || || || |||| | | | | |||||| || || | |||||||| | | Sbjct 95058 TTCAAATTCTTCACCGTAAACGTCGGCAAGTCCAGGGCACTCGGCGGGACACATAAGAGT 94999 Query 63197 CCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGC-TATAA 63255 ||| || || || | || || ||||| || ||||| | ||||| || || || || Sbjct 94998 CCAATCCCCATCGGATTCGACACGCTTCATGAAAAGATCGGAGATCCAGAGGGCGTAGAA 94939 Query 63256 ATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTT-TTAAGATCGAGGAACGCC 63314 | ||||| | | || ||||| || || ||||| ||||| || | ||| | Sbjct 94938 A-AGATCACGAGCTCGTACCTCCTCCTTACCATGGTTCTTCCTTAAG-TCAATGAAGTCA 94881 Query 63315 ATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCT 63374 | | ||||| ||||| || || | || ||||| | | ||||| || ||||| || Sbjct 94880 AATACATCAGCGTGCCAAGGCTCAAGATAGATGGCGAAGGCACCAGGACGCTTGTTACCA 94821 Query 63375 CCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTT 63434 || ||||| | ||||| ||| ||| | ||| ||| | ||| ||||| || ||||| Sbjct 94820 CCTTGATCAACGTATCGAGCTGTGGCGTCGTAAGCTCGGAGCATAGGAATGATGCCGTTG 94761 Query 63435 GATATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAATATTACTAAT-TGATAG 63493 || |||||||||||||| || ||| || | ||||| ||||| ||| ||| || Sbjct 94760 GAGTAACCATTGGTACCGGCAATGTAGGAGCCCTTCGCACGGATATTGTGAATGTGA-AG 94702 Query 63494 ACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATACC 63553 ||| || || || || | || ||||| || || || | || || |||||||| Sbjct 94701 ACCAATACCACCGGCAGTCTTGGAGATCTGAGCACAGGTCTTGAGAGTATCGTAGATACC 94642 Query 63554 CTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGT 63613 || ||| ||||| ||||| | || || || ||||||||| | || ||| Sbjct 94641 ATCAATGGAGTCATCCTTCATGGCCACGAGGAAGCATGATGACATTTGGGGTCGGGGAGT 94582 Query 63614 TCCCGCATTAAA------------------------------------------------ 63625 || || || || Sbjct 94581 ACCGGCGTTGAAAAGCTGTTATACTTGTCAGCAACAGACCTTTCATAATCGGTTGAAAAC 94522 Query 63626 -TAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAG 63684 || ||||| ||||| || || || | | ||||| | ||||| || ||||| || Sbjct 94521 TTACAGTAGGGGAAGCATGAGTGAAATACCTCTCAGACATGAGATTATAGGTCTCGATCA 94462 Query 63685 CTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTC 63744 || || || | | ||| || || || ||||| ||||| | |||||||||||| | Sbjct 94461 CTTTCTCAATGTTGGAACCATGGATACCAACGGCGACTCGCATGATCATGTGCTGAGGGC 94402 Query 63745 TTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAA 63804 || || |||||| || || | | | ||| ||| | || | ||| || ||||| | Sbjct 94401 GCTCGACAATCTTGCCATTAATCCTGAGAAGGTATGATCTCTCAAGAGTCTTGAAACCGA 94342 Query 63805 AATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGTTTATCCTTATATT 63864 | |||||||| | |||||||| || || |||||| | |||| ||| ||||||| | Sbjct 94341 AGTAGTTGTAGGCAAAGTCTCTGTCATAGATAATAGCAGAGTCGAGAATATCCTT---GT 94285 Query 63865 TGTTAACTATATCCATGGTGA-TACTTGA--AATAATCGGAGAATGTTTCCCATTTTTAG 63921 ||| | | | || || || | | | ||| || |||||||| || || | || | Sbjct 94284 TGTCCATGACAACCTTGTAGACGTCATCATCAATCATGGGAGAATGCTTGCCGGTCTTGG 94225 Query 63922 GATTAACATAGTTGAATAAA--TCCTCCATCACTTCACTAAATAGtttttttGTTTCCTT 63979 | || || | || || || || | | || || || | || || || ||||| Sbjct 94224 GGTTGACCCA--TGCATGAAGGTCATGTACGACGGCAGAGAAGACCTTCTTGGTCTCCTT 94167 Query 63980 GTGTAGATTTGATACGGCTATTCTGGCGGCTAGAATGGCATAATCCGGATG 64030 || || || || | ||||||| ||| || || || ||||||||||| || Sbjct 94166 ATGAAGGTTGGAAATAGCTATTCGGGCAGCAAGGATAGCATAATCCGGGTG 94116 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622942629124920