Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022221 55.1_202017-07-20] 587 sequences; 18,505,623 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq185 232 2e-55 seq5 89.7 1e-12 >seq185 Length=108970 Score = 232 bits (256), Expect = 2e-55 Identities = 639/977 (65%), Gaps = 12/977 (1%) Strand=Plus/Plus Query 363592 CCACAGATGTCTTCTTGCTTTCTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTT 363651 || || ||||| || ||||| || | |||||||| || ||||| || ||||||| Sbjct 94591 CCCCAAATGTCATCATGCTTCCTCGTGGCCATGAAGGATGACTCCATTGATGGTATCTAC 94650 Query 363652 GACACACTTAAGAATTGTGCTCTTATTTCCAAGAATGCAGGCGGAATTGGTGTATCGATC 363711 || || || |||| ||||||| || ||||||| ||| || || |||||| | || Sbjct 94651 GATACTCTCAAGACCTGTGCTCAGATCTCCAAGACTGCCGGTGGTATTGGTCTTCACATT 94710 Query 363712 CACAATGTTCGTGCACAGAACAGTTACATTCGCGGCACAGGGGGATACTCGAATGGGCTG 363771 |||||| | ||||| || | |||||| ||| || || ||||| || || | Sbjct 94711 CACAATATCCGTGCGAAGGGCTCCTACATTGCCGGTACCAATGGTTACTCCAACGGCATC 94770 Query 363772 GTTCCCATGCTTCGTGTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAG 363831 |||| ||||| || | | ||| || || | ||||| || || ||||| ||| Sbjct 94771 ATTCCTATGCTCCGAGCTTACGACGCCACAGCTCGATACGTTGATCAAGGTGGTAACAAG 94830 Query 363832 CGCAAAGGGGCGTTTGCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTT 363891 || || || || || || ||||| |||||| || || ||| | ||||| || || Sbjct 94831 CGTCCTGGTGCCTTCGCCATCTATCTTGAGCCTTGGCACGCTGATGTATTTGACTTCATT 94890 Query 363892 GAGCTCCGGAAAAACACGGGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTT 363951 || | |||| ||| || || ||||| | || || |||||||| ||||| || || Sbjct 94891 GACTTAAGGAAGAACCATGGTAAGGAGGAGGTACGAGCTCGTGATCTTTTCTACGCCCTC 94950 Query 363952 TGGGTTTCTGACCATTTTATGAAGCGCGTGGAGGCAGGTAAGAATTGGTCACTCTTTTG- 364010 ||| | || || | ||| |||||||| || || | | | | ||||| |||||| || Sbjct 94951 TGGATCTCCGATCTTTTCATGAAGCGTGTCGAATCCGATGGGGATTGG--ACTCTTATGT 95008 Query 364011 --CCCACACGAATGTCCAGGTCTTTCCGATGTATGGGGTGACGACTATGTTGCTCTATAC 364068 ||| | ||| || || || ||| |||| || | ||||| || | || || || Sbjct 95009 GTCCCGC-CGAGTGCCCTGGACTTGCCGACGTTTACGGTGAAGAATTTGAAAAGCTTTAT 95067 Query 364069 GAAAAGTATGAATCGGAGGGAAAGGCTCGTAAGACAATTCCCGCACAGAAGCTATGGTTT 364128 || | || || | |||| |||| | || || || || |||||||| ||||| Sbjct 95068 GAGAGCTACGAGAGGCAGGGCAAGGGAAGGAAAACTATCAAAGCCCAGAAGCTTTGGTTC 95127 Query 364129 GCCATCATGGATTCGCAGATTGAGACAGGAACACCCTATATGTTGTACAAAGATTCGTGC 364188 |||||| | || | || | ||||| || || || || | ||||| ||| | | Sbjct 95128 GCCATCCTCGAGGCTCAAACCGAGACTGGTGTCCCTTACATCTGCTACAAGGATGCTGCC 95187 Query 364189 AACCGCAAGTCCAACCAGCAGCACCTTGGTACAATTCAGCAGAGCAACCTATGTACCGAG 364248 ||| |||||||||||| ||||||||||||| || | || ||||| ||||| || Sbjct 95188 AACTCCAAGTCCAACCAAAAGCACCTTGGTACCATCAAATCCAGTAACCTCTGTACTGAA 95247 Query 364249 ATTATTGAATACACCGCTCCCGACGAGACTGCCGTATGTAACCTTGCGTCGATCGCGCTT 364308 || || || || | |||| || || ||| || ||||| ||||| || | || ||| Sbjct 95248 ATCATGGAGTATTCTTCTCCTGATGAAGTTGCTGTCTGTAATCTTGCTTCTCTTGCTCTT 95307 Query 364309 CCGGCGTTTGTA------AAAGATGGTACTTTTGACCACCAGCATCTTTATGACGTAACC 364362 || || || ||| || | | | |||| | | | || | || | ||| Sbjct 95308 CCTGCCTTCGTAGACCTTGAACGTCGCGTCTATGACTTCAAAAAGCTGCACGAGATTACC 95367 Query 364363 TATCATGCTACTTGCAATCTCGACAAGGTTATCGACAAGAATTATTATCCAATTCCTGAA 364422 | || ||| || || |||| || ||| | || || |||||| | ||||| Sbjct 95368 AAGGTTGTTACAAAGAACCTTGACACTGTAATCACCCGTAACTACTATCCAGTGCCTGAG 95427 Query 364423 GCCGAGCGTTCTAATATGCGTCATCGCCCGATTGGTCTTGGTGTACAGGGCCTCGCTGAC 364482 ||| || || ||||| ||||| || ||||||||||||| ||||| || || ||| Sbjct 95428 GCCCGCAACTCCAACATGCGCCATCGACCTGTTGGTCTTGGTGTCCAGGGTCTTGCCGAC 95487 Query 364483 GTTTTTATGATGCTCAAGATGGCATTTGATTCGCCTGACGCTCGTGTTCTAAATAAGGAG 364542 | ||| ||| || ||| | || || || |||| ||| | | || |||| || Sbjct 95488 GCTTTCATGGCCCTTCGCATGCCGTTCGACTCCGCTGAGGCTAGGGAACTCAATATCCAG 95547 Query 364543 ATCTTTGAAACAATGTA 364559 ||||| || || || || Sbjct 95548 ATCTTCGAGACGATATA 95564 >seq5 Length=47339 Score = 89.7 bits (98), Expect = 1e-12 Identities = 91/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 22513 GTTGAAGGCATTTTCTTTTCTGGAGCATTTTGTGCAATCTTTTGGCTaaaaaaaCGTGCA 22572 || |||||||||||||||||||| | ||| ||||||||| ||| |||| || | | Sbjct 13218 GTGGAAGGCATTTTCTTTTCTGGGTCTTTTGCTGCAATCTTCTGGTTAAAGAAGAGAGGG 13277 Query 22573 ATTATGCCGGGTCTAACGTTTTCAAATGAGTTAATTAGCCGAGATGAGGGTCTTCATAC 22631 | ||||| || || || |||||||| ||||| || ||| | |||||||| | ||||| Sbjct 13278 TTGATGCCTGGACTGACATTTTCAAACGAGTTGATCAGCAGGGATGAGGGGATGCATAC 13336 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303343797559034