Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022221
55.1_202017-07-20] 587 sequences; 18,505,623 total letters
Query= NC_008293.1
Length=135454
Score E
Sequences producing significant alignments: (Bits) Value
seq449 131 1e-25
>seq449
Length=79778
Score = 131 bits (144), Expect = 1e-25
Identities = 153/204 (75%), Gaps = 2/204 (1%)
Strand=Plus/Plus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || ||||| |||||||||||||| || | ||||| | ||||| |||||||||
Sbjct 78274 ATGCAGATCTTTGTCAAGACTTTGACCGGAAAGACTATCACTCTTGAAGTCGAGTCGTCT 78333
Query 25059 GACACTATCGA-GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117
||||||||||| | | | || || | ||| ||||| ||||| ||||| ||||| ||
Sbjct 78334 GACACTATCGACAACGTTAAGGCGAAGATTCA-GGACAAGGAAGGTATTCCTCCTGATCA 78392
Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177
|| || | |||||||| || |||||| | || |||| ||| ||| | ||| |||||
Sbjct 78393 GCAACGATTGATTTTTGCTGGTAAACAACTGGAGGATGGTCGTACTCTTTCCGACTACAA 78452
Query 25178 TATTCAAAAAGAATCCACGCTACA 25201
|| ||||| || || || || ||
Sbjct 78453 CATCCAAAAGGAGTCTACCCTTCA 78476
Score = 91.5 bits (100), Expect = 1e-13
Identities = 145/206 (70%), Gaps = 4/206 (2%)
Strand=Plus/Plus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
|||||||| || || || || | ||||| ||| |||| || | ||||| || |||
Sbjct 77767 ATGCAAATCTTCGTCAAAACCCTCACCGGCAAAACCATTACCCTTGAAGTCGAAAGCTCT 77826
Query 25059 GACACTATCGAGTCACTG--AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116
|| || ||||| || || ||| || ||| ||||| || || || || ||||| |
Sbjct 77827 GATACCATCGA--CAATGTCAAGGCCAAGATCCAAGACAAGGAGGGTATCCCCCCTGATC 77884
Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176
| || || | || || ||||| |||||| | ||||||| || ||| | ||||||||
Sbjct 77885 AGCAACGACTCATCTTCGCCGGAAAACAACTTGAAGATGGCCGAACTCTTTCCGATTACA 77944
Query 25177 ATATTCAAAAAGAATCCACGCTACAT 25202
|||| ||||| || || || || |||
Sbjct 77945 ATATCCAAAAGGAGTCTACCCTCCAT 77970
Score = 89.7 bits (98), Expect = 4e-13
Identities = 118/162 (73%), Gaps = 4/162 (2%)
Strand=Plus/Plus
Query 24996 ACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCG 25055
|| |||||||| || || |||||| | |||||||| | ||||| | |||||||||||
Sbjct 77485 ACCATGCAAATTTTCGTCAAGACTCTCACCGGTAAGACTATCACTCTTGAAGTGGAGTCT 77544
Query 25056 TCTGACACTATCGAGTCACTG--AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTG 25113
|| ||||| ||||| || || ||| || ||| ||||| || || || || ||||
Sbjct 77545 TCCGACACCATCGA--CAATGTCAAGGCCAAGATCCAAGACAAGGAGGGTATCCCTCCTG 77602
Query 25114 ACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATG 25155
|||| || || | || ||||| || || || | |||||||
Sbjct 77603 ACCAGCAACGATTGATCTTTGCTGGTAAGCAGCTTGAAGATG 77644
Score = 84.2 bits (92), Expect = 2e-11
Identities = 129/181 (71%), Gaps = 6/181 (3%)
Strand=Plus/Plus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || || || |||||| | ||||| || | ||||| | || || || || |||
Sbjct 77995 ATGCAGATTTTCGTCAAGACTCTTACCGGAAAGACTATCACTCTTGAGGTTGAATCCTCT 78054
Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115
||||| || || || || | || || | ||| ||||| || || || || ||||||
Sbjct 78055 GACACCATTGA--CAATGTCAAGGCGAAGATTCAG-GACAAGGAGGGTATCCCTCCTGAC 78111
Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175
||||| || | || || ||||| || ||| | ||||||| ||| ||| || ||||||
Sbjct 78112 CAACAACGATTGATCTTCGCCGGAAAGCAACTGGAAGATGGTCGAACTTTGTCTGATTAC 78171
Query 25176 A 25176
|
Sbjct 78172 A 78172
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 433324899944405
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |