Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022221 55.1_202017-07-20] 587 sequences; 18,505,623 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq449 167 4e-36 seq144 109 1e-18 seq90 102 2e-16 >seq449 Length=79778 Score = 167 bits (184), Expect = 4e-36 Identities = 173/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || ||||| || | || || || ||||| |||||||| || |||||||| Sbjct 77993 CCACCTCGGAGACGCAAGACGAGATGGAGGGTAGACTCCTTTTGGATATTGTAATCGGAA 77934 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | |||||||| | || || |||||||| ||||||| ||| || || || || Sbjct 77933 AGAGTTCGGCCATCTTCAAGTTGTTTTCCGGCGAAGATGAGTCGTTGCTGATCAGGGGGG 77874 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || ||||||||||| ||||| |||||||| |||||||| || | ||| ||| Sbjct 77873 ATACCCTCCTTGTCTTGGATCTTGGCCTTGACATTGTCGATGGTATCAGAGCTTTCGACT 77814 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | ||| |||||||| || |||||||| |||||||| || ||||| Sbjct 77813 TCAAGGGTAATGGTTTTGCCGGTGAGGGTTTTGACGAAGATTTGCAT 77767 Score = 145 bits (160), Expect = 1e-29 Identities = 158/207 (76%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || ||||| || | || || || ||||| |||||||| || |||||||| Sbjct 78781 CCACCTCGGAGACGCAAGACGAGATGGAGGGTAGACTCCTTTTGGATATTGTAATCGGAA 78722 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | |||||||| | || || |||||||| ||||||| ||| || || || || Sbjct 78721 AGAGTTCGGCCATCTTCAAGTTGTTTTCCGGCGAAGATGAGTCGTTGCTGATCAGGGGGG 78662 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT-GATTCTAC 68413 || || ||||||||||| ||||| ||||||||| |||||||| || ||| ||||| || Sbjct 78661 ATACCCTCCTTGTCTTGGATCTTGGCCTTGACGTTGTCGATGGTATC-GCTCGATTCGAC 78603 Query 68414 TTCCAAGGTGATGGTTTTTCCCGTGAG 68440 ||| | ||||| || || ||||| || Sbjct 78602 TTCAAGAGTGATTGTCTTACCCGTAAG 78576 Score = 141 bits (156), Expect = 2e-28 Identities = 137/176 (78%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 68286 TAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGG 68345 || |||||||| ||||| |||||||| | |||||| || || || || | || ||| ||| Sbjct 77663 TAGTCGGAGAGAGTCCTGCCATCTTCAAGCTGCTTACCAGCAAAGATCAATCGTTGCTGG 77604 Query 68346 TCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT 68405 || || || || || ||||||||||| ||||| |||||||| ||||||||||| | Sbjct 77603 TCAGGAGGGATACCCTCCTTGTCTTGGATCTTGGCCTTGACATTGTCGATGGTGTCGGAA 77544 Query 68406 GATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || || ||||| | ||||| || || || ||||| ||||||||||| || ||||| Sbjct 77543 GACTCCACTTCAAGAGTGATAGTCTTACCGGTGAGAGTCTTGACGAAAATTTGCAT 77488 Score = 140 bits (154), Expect = 6e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || || | || | ||| || || ||||| ||||||||||| || ||||| Sbjct 78500 CCACCACGCAGACGGAGAACAAGGTGAAGGGTAGACTCCTTTTGGATGTTGTAGTCGGAA 78441 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||| || | || || || || || || | || ||| || || || ||| Sbjct 78440 AGAGTACGACCATCCTCCAGTTGTTTACCAGCAAAAATCAATCGTTGCTGATCAGGAGGA 78381 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || ||||||||||| |||||||| ||||| ||| ||||| ||||| | || || ||| Sbjct 78380 ATACCTTCCTTGTCCTGAATCTTCGCCTTAACGTTGTCGATAGTGTCAGACGACTCGACT 78321 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | ||||| || ||||| || | |||||||| || |||||||| Sbjct 78320 TCAAGAGTGATAGTCTTTCCGGTCAAAGTCTTGACAAAGATCTGCAT 78274 Score = 132 bits (146), Expect = 9e-26 Identities = 135/176 (77%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 68286 TAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGG 68345 ||||| || | || | |||||||| | ||||| |||||||| || | || ||||||| Sbjct 78170 TAATCAGACAAAGTTCGACCATCTTCCAGTTGCTTTCCGGCGAAGATCAATCGTTGTTGG 78111 Query 68346 TCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT 68405 || || || || || |||||||| |||||||| |||||||| || |||||||| | Sbjct 78110 TCAGGAGGGATACCCTCCTTGTCCTGAATCTTCGCCTTGACATTGTCAATGGTGTCAGAG 78051 Query 68406 GATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||| || || | ||||| || ||||| || || ||||||||||| |||||||| Sbjct 78050 GATTCAACCTCAAGAGTGATAGTCTTTCCGGTAAGAGTCTTGACGAAAATCTGCAT 77995 >seq144 Length=196294 Score = 109 bits (120), Expect = 1e-18 Identities = 444/683 (65%), Gaps = 30/683 (4%) Strand=Plus/Plus Query 224978 TACCGCCACTGGATGTACTGGTTGGGGGTCATGTCCAGGTGGTTCTCAATATGGTGGAAA 225037 || ||||| | ||||||| ||| || ||| |||||||| ||||| ||||||||| Sbjct 51967 TATCGCCAGAGCATGTACTCAAGGGGAGTAGAGTCAAGGTGGTTGTCAATGTGGTGGAAA 52026 Query 225038 GCATGCTGGGCTACGTACGCCATGCGCATGTTGGGATGCTTCCACA-CAGAGCCCCGAG- 225095 || || ||||| ||||| | ||| || ||| || |||||||| | | || | || || Sbjct 52027 GCGTGTTGGGCGACGTAACCAATGACCAAGTTAGGGTGCTTCCAGACCTGACCGCCAAGG 52086 Query 225096 -TCGGTTGTGCCTCGCCGGTGAGGACCTTGATGAGCGTAGTCTTGCCCGCACCATTGGGG 225154 | || | | ||| || ||||||| ||| | || |||| || || | ||| ||||| Sbjct 52087 TTGGGCTCAGTCTCACCAGTGAGGAGCTTAACAAGGGTAGATTTACCGGAACCGTTGGGA 52146 Query 225155 CCAATCACGCCAATCCGGGATGACATTGCAACCT---GCGAGTTCACGT-----TGCTGA 225206 |||| | | ||| |||||||| | | |||| | ||| | ||| ||||| Sbjct 52147 CCAAGAATGGCAACTCGGGATGAGAGAGACACCTGGAGAGAGATGTCGTAGAGCTGCTG- 52205 Query 225207 AGATCTCAGGGCCAGTTTGGTAAGCAAAGGCCACGCCACGCAGCTTCATGATGGCACGGT 225266 ||| || |||| |||| || | ||| |||| ||| | | | | Sbjct 52206 -GATAGAAGAACCAG---GGTACTGGAATGAAACGTTTCGCATCTTGAGCAAAGACTTCT 52261 Query 225267 CCTTGGAAGTAATACCCTCCAGGAACCCGGGCTCGGGGAACTCCCACT--TGGT-CACCG 225323 |||||| | | ||| || |||| || | || | || ||| | || | | | Sbjct 52262 CCTTGGTCTTCACACCATCAAGGAGGGGAGGGTTAGGAAGCTTGAACTGGTAGTCCTCAG 52321 Query 225324 CGTCCTTCAGGTCGTAGTAAGATGCAGCCTC-GGGTCGCTTTGCCACGAAAGCAGACAGG 225382 || | | || | |||||| || |||||| ||| | || |||||| | ||| Sbjct 52322 CGACATCGAGTTGGTAGTAGGACTTAGCCTCAGGGACATGCTG-GACGAAATCCTCAAGG 52380 Query 225383 TTTCCGAGGTGCTTCGTGAGCTTGAGGTTCTTCTCGTAATGAACAATTGCCGAGCACACT 225442 || || ||| | || | | ||||| ||| || ||||| || | || ||| | Sbjct 52381 TTACCAGGGTACCTCTTCAACTTGAAGTTGTT---AAGATGAAGAA-CGTCGGTAACAGT 52436 Query 225443 GC-GTCAAGGAAGCCAGAGTCGTGGGACACAATGATGGACG-ACA-CGTTCGTCAGGCCC 225499 | || ||||||| |||||||||| || ||||||||||| | ||| || || ||| Sbjct 52437 TCGGTTAAGGAAGTCAGAGTCGTGAGAGACAATGATGGAGGTACATCG--AGTAAGGGAG 52494 Query 225500 TTGAGGTGCGTGATGAGCCATGCCACGTTGCTGACGTCCATGTGGTTTGTAGGTTCGTCC 225559 |||||| |||| ||||| | ||||| || |||| |||||| ||||| ||||| Sbjct 52495 GTGAGGTAGTTGATCAGCCAGTCAACGTTAAGAACATCCAAGTGGTTGGTAGGCTCGTCG 52554 Query 225560 AGAAGCAGGATGTCAGCATCAATGAGGATGGCGCGCGTGAGAGACAGCTTCATTTTCCAG 225619 || | ||||| || || | | ||| || || || | |||| |||||||| ||||| Sbjct 52555 AGCAAGAGGATATCGGCCTTGAAGAGAATAGCTCGGGCAAGAGCAAGCTTCATCTTCCAA 52614 Query 225620 CCCCCGGACAGGGAGCCGATTGA 225642 || || || || || || || || Sbjct 52615 CCGCCAGAAAGAGAACCAATGGA 52637 >seq90 Length=80925 Score = 102 bits (112), Expect = 2e-16 Identities = 266/401 (66%), Gaps = 10/401 (2%) Strand=Plus/Plus Query 176132 GGTGGGAACATAGTATTCCGGTTCAATCCGGTCGCCGTCATCCTCGAGGTAGTTCAGCAG 176191 |||||| | | || || |||||||| || || || || | | |||||| |||| Sbjct 70496 GGTGGGCATGAAATAATCTGGTTCAATGCGCATACCATCCTCGACCAAGTAGTTGAGCAA 70555 Query 176192 ACGCTCGTCGGCCTTGTGGAAAATATCCCGGGTGTTGGGGGACAGTTGTGTGAAGATATA 176251 | || || || |||||| || | || || | | | || | |||||||||||| Sbjct 70556 CCCGTCATCTGCAGGGTGGAAGATTGCTCGAGTCATCCGTGGAAGGTTTGTGAAGATATA 70615 Query 176252 CCTAGCAGACGCACTGTCCTTGCCTCCGTGAAGGCGGGAACCGAATTGTCCGCGAGGAAG 176311 | |||||| || ||| || || || ||| || | ||| ||||| ||| ||| Sbjct 70616 ACGAGCAGAAGCTGCGTCTTTACCACCTGCAAGACGAGTACCAAATTGGCCGTTGGGATC 70675 Query 176312 AAGCAAATTGATGTTATTCGAACCCACGTAGTCTTGGGCCATTCCGACTATGGCGCCCTG 176371 |||| ||||||||| || || ||| ||| ||| || | ||||| |||| | | Sbjct 70676 CAGCAGATTGATGTTGTTACTGCCGACGAAGTTTTGTGCTAAACCGACAATGGTG----G 70731 Query 176372 GAG--AGAC--GCCTCGCCGTGGTGATAGCCGGCGTTCTCACTTGTGTATCCGGCAAACT 176427 || | || || || || ||||| || ||| ||||| ||| ||||||| || Sbjct 70732 AAGTCAAACTGGCTTCACCATGGTGGTATGCGGTTTTCTCCGAAACGTAGCCGGCAAGCT 70791 Query 176428 GCGCGACTTTGATTTCTTGTACGAGGTTGCGCTT-CAACGCCGAGAACAGAATCTTCCGC 176486 | ||||| |||||||||| |||||| ||||| ||| | | || |||| ||| ||| Sbjct 70792 GAGCGACCTTGATTTCTTTGGTGAGGTTTCGCTTGAAACAACCA-AAGAGAACCTTTCGC 70850 Query 176487 TGCGAGGGCTTCAGACCATCGACGACCGACGGAATGGAACG 176527 || || || ||||| ||| | || || ||||| || || Sbjct 70851 TGACCAGGTTTGAGACCGTCGGCCACAGATGGAATCGATCG 70891 Score = 100 bits (110), Expect = 5e-16 Identities = 115/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 68286 TAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGG 68345 || || || || ||||| || || || | |||||| |||||||| || | || || ||| Sbjct 51469 TAGTCAGAAAGGGTCCTGCCGTCCTCGAGCTGCTTTCCGGCGAAGATCAATCGCTGCTGG 51528 Query 68346 TCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT 68405 || || || || || |||||||| || ||||| | |||||| ||||||||||| | Sbjct 51529 TCAGGGGGGATACCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAG 51588 Query 68406 GATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAG 68440 || || || || | ||||||||| ||||| || || Sbjct 51589 GACTCGACCTCGAGGGTGATGGTCTTTCCGGTAAG 51623 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921615637595640