Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022221
55.1_202017-07-20] 587 sequences; 18,505,623 total letters
Query= NC_009127.1
Length=295146
Score E
Sequences producing significant alignments: (Bits) Value
seq185 179 7e-40
seq449 136 7e-27
seq5 89.7 1e-12
>seq185
Length=108970
Score = 179 bits (198), Expect = 7e-40
Identities = 440/664 (66%), Gaps = 10/664 (2%)
Strand=Plus/Minus
Query 244733 ATCTCGGTGCAGAGGTTACTGCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCG 244792
|| || || |||||||||||| | |||||||| || ||||||| || |||||||||| |
Sbjct 95249 ATTTCAGTACAGAGGTTACTGGATTTGATGGTACCAAGGTGCTTTTGGTTGGACTTGGAG 95190
Query 244793 TTGCAGGCGTCCTTGTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGACG 244852
||| || ||||||||| ||| | || | || |||||| || || |||||| |
Sbjct 95189 TTGGCAGCATCCTTGTAGCAGATGTAAGGGACACCAGTCTCGGTTTGAGCCTCGAGGATG 95130
Query 244853 CTGTTCCAGAGGTCCCTAGCCTTGACCGTCCTGCGAGCCTTGCCCTCTGCCTCGTAGCGG 244912
| ||| || | | || |||| || | | ||||||||| ||||||||
Sbjct 95129 GCGAACCAAAGCTTCTGGGCTTTGATAGTTTTCCTTCCCTTGCCCTGCCTCTCGTAGCTC 95070
Query 244913 GTGTACAGGGCCTCGAACTCGGGGCCCCAGACCTCGTCTAGGCCGGGGCACGACGCCGGG 244972
|| || || || || || | || ||| | || || |||||| || ||
Sbjct 95069 TCATAAAGCTTTTCAAATTCTTCACCGTAAACGTCGGCAAGTCCAGGGCACTCGGCGGGA 95010
Query 244973 CACATGAGACTCCACTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAG 245032
||||| ||| |||| || || || | ||| | || |||||| || |||| |||||||
Sbjct 95009 CACATAAGAGTCCAATCCCCATCGGATTCGACACGCTTCATGAAAAGATCGGAGATCCAG 94950
Query 245033 AGGGCCTGGAAGAGGTCCCTGGTCCTCTGCTCGTCCGAGCCAGTGTTCTTCCTCAGCTCC 245092
||||| | ||| || || | | | ||| ||| ||| ||||||||| | ||
Sbjct 94949 AGGGCGTAGAAAAGATCACGAGCTCGTACCTCCTCCTTACCATGGTTCTTCCTTAAGTCA 94890
Query 245093 AAAAAGTCAAAGACGTCGACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGC 245152
| |||||||| || || ||||||| ||||| | |||| |||| ||| || || |||
Sbjct 94889 ATGAAGTCAAATACATCAGCGTGCCAAGGCTCAAGATAGATGGCGAAGGCACCAGGACGC 94830
Query 245153 TTGTTGCCTCCCTGGTCCACCATCCTCTCGAGC----GCGTTG-AAGATGCGCAGGGTAG 245207
||||| || || || | || | | |||||| |||| | ||| | || || |||
Sbjct 94829 TTGTTACCACCTTG----ATCAACGTATCGAGCTGTGGCGTCGTAAGCT-CGGAGCATAG 94775
Query 245208 GCACTATGCCGTTAGAGTGGCCGTTGGTGCCCTTGATGTAGGCGCCCTTGCCCCTGAGGT 245267
| | |||||||| |||| || ||||| || ||||||| |||||| | | || |
Sbjct 94774 GAATGATGCCGTTGGAGTAACCATTGGTACCGGCAATGTAGGAGCCCTTCGCACGGATAT 94715
Query 245268 TGCTGATGGACATGCCTAGTCCGCCGGCGTGCTTGGAGATGAGGGCGCAGCTCTTGATGG 245327
|| ||| | || | || ||||| ||||||||| | || ||| |||||| |
Sbjct 94714 TGTGAATGTGAAGACCAATACCACCGGCAGTCTTGGAGATCTGAGCACAGGTCTTGAGAG 94655
Query 245328 TGTCTGCTATGCCCTCCATGCTGTCCGACTTCATGTTGAGCAGAAAGCAGGAGGACAGCT 245387
| || || || || ||| ||| ||||||| | || ||||| || |||| |
Sbjct 94654 TATCGTAGATACCATCAATGGAGTCATCCTTCATGGCCACGAGGAAGCATGATGACATTT 94595
Query 245388 GGGG 245391
||||
Sbjct 94594 GGGG 94591
>seq449
Length=79778
Score = 136 bits (150), Expect = 7e-27
Identities = 135/172 (78%), Gaps = 2/172 (1%)
Strand=Plus/Minus
Query 42693 TTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTC 42752
||||||||| | || | || ||| | ||||| ||||| ||||||||||| || | |||
Sbjct 63709 TTCGGCGAGCGACTCATTGCTTTTGCTGCCGTGGAGGGTATCTTCTTCTCTGGTTCTTTC 63650
Query 42753 GCCTCCATCTTCTGGCTCAAGCAGA-AGGTGTCGATGCCCGGACTCACCTTCTCGAACGA 42811
|| |||||||||||||| ||| || |||| || ||||| || ||||||||||| |||||
Sbjct 63649 GCGTCCATCTTCTGGCTTAAGAAGCGAGGTCTC-ATGCCTGGTCTCACCTTCTCTAACGA 63591
Query 42812 ACTCATCAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTC 42863
|||||| | |||||||| || || | ||||||||||| ||||| |||
Sbjct 63590 GCTCATCTCTCGAGACGAGGGTCTCCACACCGACTTTGCCTGTCTCCTCTTC 63539
>seq5
Length=47339
Score = 89.7 bits (98), Expect = 1e-12
Identities = 103/139 (74%), Gaps = 0/139 (0%)
Strand=Plus/Plus
Query 42702 AGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATC 42761
|| ||||| || ||| | ||| || ||||| ||||| || || | || || | |||
Sbjct 13197 AGACTGGTGGCTTTTGCATGCGTGGAAGGCATTTTCTTTTCTGGGTCTTTTGCTGCAATC 13256
Query 42762 TTCTGGCTCAAGCAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGC 42821
|||||| | ||| ||| | || |||||| ||||| || || || ||||| | ||||||
Sbjct 13257 TTCTGGTTAAAGAAGAGAGGGTTGATGCCTGGACTGACATTTTCAAACGAGTTGATCAGC 13316
Query 42822 AGGGACGAGGGGCTGCATA 42840
||||| |||||| ||||||
Sbjct 13317 AGGGATGAGGGGATGCATA 13335
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 944332270911120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |