Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022221 55.1_202017-07-20] 587 sequences; 18,505,623 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq185 167 3e-36 seq449 122 1e-22 seq90 111 2e-19 >seq185 Length=108970 Score = 167 bits (184), Expect = 3e-36 Identities = 713/1116 (64%), Gaps = 27/1116 (2%) Strand=Plus/Minus Query 114103 CCACATATCAAACTGGAGGATACCTTGGGAGGCTGGCGATCCCTCAAATGTCTCGTATGG 114162 |||||| || |||| |||||||| | ||| || || || || | | || || | Sbjct 95670 CCACATGTCGTACTGAAGGATACCCTTAGAGATGGGAGAACCTTCGTAAGATTCATAGGT 95611 Query 114163 GCCCTCAACCTCCGCCAATTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTCTCAAA 114222 || |||| || | |||| | |||||| || || ||||| || || ||||| || Sbjct 95610 ACCAAACTCCTCGGCAAGTTCGCACGACGCCTCAAGTGCCGCGTGGTATATCGTCTCGAA 95551 Query 114223 AATGCGAGCATTCATTGCCTTGGCCTCGTCGGAATCAAACGCGAGTCGGCACAAAATAAA 114282 || | ||| | | || | ||||| |||| || |||| | || || || Sbjct 95550 GATCTGGATATTGAGTTCCCTAGCCTCAGCGGAGTCGAACGGCATGCGAAGGGCCATGAA 95491 Query 114283 TACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCG 114342 | || || ||||| |||||||| || |||| || ||||| | ||| || || || || Sbjct 95490 AGCGTCGGCAAGACCCTGGACACCAAGACCAACAGGTCGATGGCGCATGTTGGAGTTGCG 95431 Query 114343 AGCGGTCTC---CACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGAC 114399 || ||| ||| ||||| | || | ||| || | | || || || || || Sbjct 95430 GGC---CTCAGGCACTGGATAGTAGTTACGGGTGATTACAGTGTCAAGGTTCTTTGTAAC 95374 Query 114400 AACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATA 114459 |||||| || || || || ||||||| | | ||| | |||| || | || | Sbjct 95373 AACCTTGGTAATCTCGTGCAGCTTTTTGAAGTCATAGACGCGACGTTCAAGGTCTACGAA 95314 Query 114460 CTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTC 114519 |||||| || | || || |||||||| |||| ||||| | || ||||| Sbjct 95313 GGCAGGAAGAGCAAGAGAAGCAAGATTACAGACAGCAACTTCATCAGGAGAAGAATACTC 95254 Query 114520 TATAATTTCCGTACACAAATT--TGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGAC 114577 || ||||| ||||| | || || | | | ||||| || | || |||||| || ||| Sbjct 95253 CATGATTTCAGTACAGAGGTTACTGGATT--TGATGGTACCAAGGTGCTTTTGGTTGGAC 95196 Query 114578 TTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTG 114637 || | ||| ||||||||||| ||||| || || ||||| ||||| | || | Sbjct 95195 TTGGAGTTGGCAGCATCCTTGTAGCAGATGTAAGGGACACCAGTCTCGGTTTGAGCCTCG 95136 Query 114638 AGAATAGCCTTCCAGA-CATCGGCGGCTGGCACAGTGG-CGTTGGCTCGCCCCTCCTCCT 114695 || || || ||| | | || | |||| | ||| | || || |||| |||| | Sbjct 95135 AGGATGGCGAACCAAAGCTTCTG-GGCTTTGATAGTTTTCCTTCCCTTGCCCTGCCTC-T 95078 Query 114696 CGTACTTTGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCT 114755 |||| | || || |||||| |||||||| | || | || || || || Sbjct 95077 CGTAGCTCTCATAAAGCTTTTCAAATTCTTCACCGTAAACGTCGGCAAGTCCAGGGCACT 95018 Query 114756 TATCTGGGCAGAAGAGAGACCATTGACCACCCTCCTCAACACGCTTCATGAAGAGGTCTG 114815 | || || | |||| ||| | ||| | || |||||||||||||| || || | Sbjct 95017 CGGCGGGACACATAAGAGTCCAATCCCCATCGGATTCGACACGCTTCATGAAAAGATCGG 94958 Query 114816 GGATCCAGAGAGCTGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGAC 114875 ||||||||| || |||| ||||| ||| || | || || | || || || | Sbjct 94957 AGATCCAGAGGGCGTAGAAAAGATCACGAGCTCGTACCTCCTCCTTACCATGGTTCTTCC 94898 Query 114876 GCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACC 114935 || || | ||||| | | ||| |||||||| || || || || | |||| | | Sbjct 94897 TTAAGTCAATGAAGTCAAATACATCAGCGTGCCAAGGCTCAAGATAGATGGCGAAGGCAC 94838 Query 114936 CCTTACGACG------ACCAGCCTGGTTTACATACCTCGCTGTGGCATTAAATACGCGAA 114989 | | |||| |||| | || | || || | |||||||| | | | || | Sbjct 94837 C---AGGACGCTTGTTACCACCTTGATCAACGTATCGAGCTGTGGCGTCGTAAGCTCGGA 94781 Query 114990 GCATTGGAATGATACCATCAGATTGGCCATTTGTCCCCCGAA--TACGAGACTTATTGGC 115047 |||| |||||||| || | || | ||||| || || || || ||| | || || Sbjct 94780 GCATAGGAATGATGCCGTTGGAGTAACCATTGGTACCGGCAATGTAGGAGCC--CTTCGC 94723 Query 115048 TCTGACATCATGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTC 115107 | || || || ||||| | ||||||||| || || ||| ||||| || || || Sbjct 94722 ACGGATATTGTGAATGTGAAGACCAATACCACCGGCAGTCTTGGAGATCTGAGCACAGGT 94663 Query 115108 CGTGAGACTGCCGTAGATCCCGTCGATCGAGTCACCCTTATTTGCGATAAGGAAGCAGCT 115167 | ||||| | ||||||| || || || |||||| |||| | || | |||||||| Sbjct 94662 CTTGAGAGTATCGTAGATACCATCAATGGAGTCATCCTTCATGGCCACGAGGAAGCATGA 94603 Query 115168 CGACATTTGTGGCCTTGGTGTACCAGCGTTGAAGAG 115203 |||||||| || | || ||||| |||||||| || Sbjct 94602 TGACATTTGGGGTCGGGGAGTACCGGCGTTGAAAAG 94567 >seq449 Length=79778 Score = 122 bits (134), Expect = 1e-22 Identities = 121/154 (79%), Gaps = 2/154 (1%) Strand=Plus/Plus Query 126046 GGCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCC 126105 |||||| || ||||||||||||||| || |||||||| || || |||||| || || Sbjct 63551 GGCAAAGTCGGTGTGGAGACCCTCGTCTCGAGAGATGAGCTCGTTAGAGAAGGTGAGACC 63610 Query 126106 TGGCATGAGACCCCGCTTCTTCAACCAGAAAATCG-CACAAAATGAACCCGAGAAGAAGA 126164 ||||||||||| |||||||| | |||||| || | | | ||| ||||| |||||||||| Sbjct 63611 AGGCATGAGACCTCGCTTCTTAAGCCAGAAGATGGACGCGAAA-GAACCAGAGAAGAAGA 63669 Query 126165 TTCCCTCCACACACGCGAACGCAAAGAGACGCTC 126198 | |||||||| || || |||| ||| ||||| Sbjct 63670 TACCCTCCACGGCAGCAAAAGCAATGAGTCGCTC 63703 >seq90 Length=80925 Score = 111 bits (122), Expect = 2e-19 Identities = 286/428 (67%), Gaps = 6/428 (1%) Strand=Plus/Plus Query 171727 ACCTGTGCCAATACCTTCGGTGCCGTTCACGAGAACCATTGGAAGCGTTGGCATATAGAA 171786 ||| || || ||||| || | || || | | |||||||||| || ||||| | | Sbjct 70451 ACCAGTACCGATACCATCTGCACCATTGATCAATACCATTGGAACGGTGGGCATGAAATA 70510 Query 171787 GTCTGGTTCAAT-CGCACGCCCATCATCATCCAAATAGTTGAGCACGGGGTCGTCCCTCG 171845 ||||||||||| |||| || ||| || |||| |||||||||| ||| || | Sbjct 70511 ATCTGGTTCAATGCGCATACC-ATCCTCGACCAAGTAGTTGAGCAACCCGTCATCTGCAG 70569 Query 171846 GATCAAAGATTTTACGAG-CATCCTTGGTGAGTTTTGTGAAGATGTACCTCGTTTGAGAC 171904 | | |||||| |||| ||||| ||| || ||||||||||| || | | || Sbjct 70570 GGTGGAAGATTGCTCGAGTCATCCGTGGA-AGGTTTGTGAAGATATAACGAGCAGAAGCT 70628 Query 171905 GCATCTTTGCCACCCATGAGACGCGTCCCAAATTGACCACACGGTTCAAGGAGATTGATA 171964 || ||||| ||||| ||||| || |||||||| || || || || |||||||| Sbjct 70629 GCGTCTTTACCACCTGCAAGACGAGTACCAAATTGGCCGTTGGGATCCAGCAGATTGATG 70688 Query 171965 TTGTTTGAACCCATGTAGTCATTGGCCAACTTGACAATCGTATCCGCGAGGGAGACTTCA 172024 ||||| || | | ||| | || || |||||| || | | | ||||| Sbjct 70689 TTGTTACTGCCGACGAAGTTTTGTGCTAAACCGACAATGGTGGAAGTCAAACTGGCTTCA 70748 Query 172025 CCGTGATGGTAGGCCGACTTGTCCGCGACATACGCCGCCAA-CTGTGCCACCTTCATCTC 172083 || || ||||| || | || |||| || || |||| ||| ||| || ||||| || || Sbjct 70749 CCATGGTGGTATGCGGTTTTCTCCGAAACGTA-GCCGGCAAGCTGAGCGACCTTGATTTC 70807 Query 172084 ATCCTTGAGGTTCTTGTGGAAGCACGCATACATGACCTTTCTCTGTGAAGGCTTGAGGCC 172143 | ||||||| | ||| || || | | ||||||| ||| ||| ||||| || Sbjct 70808 TTTGGTGAGGTTTCGCTTGAAACAACCAAAGAGAACCTTTCGCTGACCAGGTTTGAGACC 70867 Query 172144 GTCGGCCA 172151 |||||||| Sbjct 70868 GTCGGCCA 70875 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597349216917960