Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022221
55.1_202017-07-20] 587 sequences; 18,505,623 total letters
Query= NC_013288.1
Length=191761
Score E
Sequences producing significant alignments: (Bits) Value
seq185 174 2e-38
seq449 122 1e-22
seq90 120 4e-22
>seq185
Length=108970
Score = 174 bits (192), Expect = 2e-38
Identities = 719/1120 (64%), Gaps = 33/1120 (3%)
Strand=Plus/Minus
Query 116063 CCCACATATCAAACTGGAGGATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATATG 116122
||||||| || |||| |||||||| | || || || || || | | ||||| |
Sbjct 95671 CCCACATGTCGTACTGAAGGATACCCTTAGAGATGGGAGAACCTTCGTAAGATTCATAGG 95612
Query 116123 GGCCCTCAACCTCCGCCAATTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTCTCAA 116182
|| |||| || | |||| | |||||| || || ||||| || || ||||| |
Sbjct 95611 TACCAAACTCCTCGGCAAGTTCGCACGACGCCTCAAGTGCCGCGTGGTATATCGTCTCGA 95552
Query 116183 AAATGCGAGCATTCATTGCCTTGGCCTCGTCGGAATCAAACGCGA---GACGGCACAAAA 116239
| || | ||| | | || | ||||| |||| || |||| | || || ||
Sbjct 95551 AGATCTGGATATTGAGTTCCCTAGCCTCAGCGGAGTCGAACGGCATGCGAAGGGCCA--- 95495
Query 116240 TAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACT 116299
| || | || || ||||| |||||||| || |||| || ||||| | ||| || || |
Sbjct 95494 TGAAAGCGTCGGCAAGACCCTGGACACCAAGACCAACAGGTCGATGGCGCATGTTGGAGT 95435
Query 116300 TTCGAGCGGTCTC---CACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGG 116356
| || || ||| ||| ||||| | || | ||| || | | || || || |
Sbjct 95434 TGCGGGC---CTCAGGCACTGGATAGTAGTTACGGGTGATTACAGTGTCAAGGTTCTTTG 95378
Query 116357 TGACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGA 116416
| |||||||| || || || || ||||||| | | ||| | |||| || | |
Sbjct 95377 TAACAACCTTGGTAATCTCGTGCAGCTTTTTGAAGTCATAGACGCGACGTTCAAGGTCTA 95318
Query 116417 CATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGT 116476
| | |||||| || | || || |||||||| |||| ||||| | || |
Sbjct 95317 CGAAGGCAGGAAGAGCAAGAGAAGCAAGATTACAGACAGCAACTTCATCAGGAGAAGAAT 95258
Query 116477 ACTCTATAATTTCCGTACACAAATT--TGAACTCTTAATGGTGCCCAAGTTCTTTTGATT 116534
|||| || ||||| ||||| | || || | | | ||||| || | || |||||| ||
Sbjct 95257 ACTCCATGATTTCAGTACAGAGGTTACTGGATT--TGATGGTACCAAGGTGCTTTTGGTT 95200
Query 116535 TGACTTTGTGTTACACGCATCCTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTGGGA 116594
||||| | ||| |||||||||||| || || || || ||||| ||||| |
Sbjct 95199 GGACTTGGAGTTGGCAGCATCCTTGTAGCAGATGTAAGGGACACCAGTCTCGGTTTGAGC 95140
Query 116595 CTTGAGAATAGCCTTCCATA-CATCGGCGGCTGGCACAG-TGGCGTTGGCTCGCCCCTCC 116652
|| ||| || || ||| | | || | |||| | || | | || || |||| ||
Sbjct 95139 CTCGAGGATGGCGAACCAAAGCTTCTG-GGCTTTGATAGTTTTCCTTCCCTTGCCCTGCC 95081
Query 116653 TCCTCGTACTTTGTGTAGAGGGCCTCAAACTCTTCACCCACAGCCTCTGAGAGCCCTGGT 116712
| |||||| | || || ||||| |||||||| | | || | || || ||
Sbjct 95080 T-CTCGTAGCTCTCATAAAGCTTTTCAAATTCTTCACCGTAAACGTCGGCAAGTCCAGGG 95022
Query 116713 GCCTTATCTGGACAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGG 116772
|| | ||||| | |||| ||| | ||| | || || ||||||||||| ||
Sbjct 95021 CACTCGGCGGGACACATAAGAGTCCAATCCCCATCGGATTCGACACGCTTCATGAAAAGA 94962
Query 116773 TCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTG 116832
|| | ||||||||| || |||| ||||| ||| || | || || | || || ||
Sbjct 94961 TCGGAGATCCAGAGGGCGTAGAAAAGATCACGAGCTCGTACCTCCTCCTTACCATGGTTC 94902
Query 116833 AGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATT 116892
| || || | ||||| | | ||| |||||||| || || || || | ||||
Sbjct 94901 TTCCTTAAGTCAATGAAGTCAAATACATCAGCGTGCCAAGGCTCAAGATAGATGGCGAAG 94842
Query 116893 G-AC-----CCCTTGCGACGACCAGCCTGGTTTACATACCTCGCCGTTGCGTTAAATACG 116946
| || | |||| |||| | || | || || | || || |||| | |
Sbjct 94841 GCACCAGGACGCTTG---TTACCACCTTGATCAACGTATCGAGCTGTGGCGTCGTAAGCT 94785
Query 116947 CGAAGCATTGGAATGATACCATCAGATTGGCCATTTGTCCCCCGAA--TACGAGACTTGT 117004
|| ||||| |||||||| || | || | ||||| || || || || ||| | |
Sbjct 94784 CGGAGCATAGGAATGATGCCGTTGGAGTAACCATTGGTACCGGCAATGTAGGAGCC--CT 94727
Query 117005 TGGCTCTGACATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGTGCGC 117064
| || | || || ||| ||||| | ||||||||| || || ||| ||||| || || |
Sbjct 94726 TCGCACGGATATTGTGAATGTGAAGACCAATACCACCGGCAGTCTTGGAGATCTGAGCAC 94667
Query 117065 ACTCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGC 117124
| | ||||| | ||||||| ||||| || |||||| |||| | || | ||||||||
Sbjct 94666 AGGTCTTGAGAGTATCGTAGATACCATCAATGGAGTCATCCTTCATGGCCACGAGGAAGC 94607
Query 117125 AGCTCGACATTTGTGGCCTTGGTGTACCAGCGTTGAAGAG 117164
| |||||||| || | || ||||| |||||||| ||
Sbjct 94606 ATGATGACATTTGGGGTCGGGGAGTACCGGCGTTGAAAAG 94567
>seq449
Length=79778
Score = 122 bits (134), Expect = 1e-22
Identities = 121/154 (79%), Gaps = 2/154 (1%)
Strand=Plus/Plus
Query 127520 GCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCT 127579
||||| || ||||||||||||||| || |||||||| || || |||||| |||||
Sbjct 63552 GCAAAGTCGGTGTGGAGACCCTCGTCTCGAGAGATGAGCTCGTTAGAGAAGGTGAGACCA 63611
Query 127580 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCG-CACAAAATGAGCCAGAGAAGAAGAT 127638
||||||||||| |||||||| | |||||| || | | | ||| || ||||||||||||||
Sbjct 63612 GGCATGAGACCTCGCTTCTTAAGCCAGAAGATGGACGCGAAA-GAACCAGAGAAGAAGAT 63670
Query 127639 CCCCTCCACACACGCGAACGCAAATAGACGCTCG 127672
|||||||| || || |||| || ||||||
Sbjct 63671 ACCCTCCACGGCAGCAAAAGCAATGAGTCGCTCG 63704
>seq90
Length=80925
Score = 120 bits (132), Expect = 4e-22
Identities = 288/428 (67%), Gaps = 6/428 (1%)
Strand=Plus/Plus
Query 175747 ACCTGTGCCAATACCTTCGGTGCCGTTCACGAGAACCATTGGAAGCGTTGGCATATAGAA 175806
||| || || ||||| || | || || | | |||||||||| || ||||| | |
Sbjct 70451 ACCAGTACCGATACCATCTGCACCATTGATCAATACCATTGGAACGGTGGGCATGAAATA 70510
Query 175807 GTCTGGTTCAAT-CGCACGCCCATCATCGTCCAAATAGTTGAGCACGGGGTCATCCCTCG 175865
||||||||||| |||| ||||| ||| |||| |||||||||| |||||| |
Sbjct 70511 ATCTGGTTCAATGCGCA-TACCATCCTCGACCAAGTAGTTGAGCAACCCGTCATCTGCAG 70569
Query 175866 GATCAAAGATTTTACGAG-CATCCTTGGTGAGTTTTGTGAAGATGTACCTCGTTTGAGAC 175924
| | |||||| |||| ||||| ||| || ||||||||||| || | | ||
Sbjct 70570 GGTGGAAGATTGCTCGAGTCATCCGTGG-AAGGTTTGTGAAGATATAACGAGCAGAAGCT 70628
Query 175925 GCATCTTTGCCACCCATGAGACGCGTCCCAAATTGACCACATGGCTCAAGGAGATTGATA 175984
|| ||||| ||||| ||||| || |||||||| || || || || ||||||||
Sbjct 70629 GCGTCTTTACCACCTGCAAGACGAGTACCAAATTGGCCGTTGGGATCCAGCAGATTGATG 70688
Query 175985 TTGTTTGAGCCCATATAGTCATTCGCCAACTTGACAATCGTATCCGCGAGGGAGACTTCA 176044
||||| ||| | ||| | || || |||||| || | | | |||||
Sbjct 70689 TTGTTACTGCCGACGAAGTTTTGTGCTAAACCGACAATGGTGGAAGTCAAACTGGCTTCA 70748
Query 176045 CCGTGATGGTAGGCCGACTTGTCCGCCACATACGCCGCCAA-CTGCGCCACCTTCATCTC 176103
|| || ||||| || | || |||| || || |||| ||| ||| || ||||| || ||
Sbjct 70749 CCATGGTGGTATGCGGTTTTCTCCGAAACGTA-GCCGGCAAGCTGAGCGACCTTGATTTC 70807
Query 176104 ATCCTTGAGGTTCTTGTGGAAGCACGCATACATGACCTTTCTCTGTGAAGGCTTGAGGCC 176163
| ||||||| | ||| || || | | ||||||| ||| ||| ||||| ||
Sbjct 70808 TTTGGTGAGGTTTCGCTTGAAACAACCAAAGAGAACCTTTCGCTGACCAGGTTTGAGACC 70867
Query 176164 GTCGGCCA 176171
||||||||
Sbjct 70868 GTCGGCCA 70875
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 613502698390920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |