Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022221
55.1_202017-07-20] 587 sequences; 18,505,623 total letters
Query= NC_013756.1
Length=368454
Score E
Sequences producing significant alignments: (Bits) Value
seq449 107 5e-18
>seq449
Length=79778
Score = 107 bits (118), Expect = 5e-18
Identities = 149/209 (71%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477
|| |||||||| || || ||||||||||||| ||||||||| | | ||| | |||||
Sbjct 78485 AGAACAAGGTGAAGGGTAGACTCCTTTTGGATGTTGTAGTCGGAAAGAGTACGACCATCC 78426
Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537
||||| || || || || || || | || ||||| || ||| ||| ||||| |||
Sbjct 78425 TCCAGTTGTTTACCAGCAAAAATCAATCGTTGCTGATCAGGAGGAATACCTTCCTTGTCC 78366
Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597
|||||||| ||| ||| |||| ||||| | | || || || | ||||| |||
Sbjct 78365 TGAATCTTCGCCTTAACGTTGTCGATAGTGTCAGACGACTCGACTTCAAGAGTGATAGTC 78306
Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626
|| || || | ||| || ||||| || ||
Sbjct 78305 TTTCCGGTCAAAGTCTTGACAAAGATCTG 78277
Score = 107 bits (118), Expect = 5e-18
Identities = 145/202 (72%), Gaps = 0/202 (0%)
Strand=Plus/Minus
Query 199408 TCGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGT 199467
||| || | || ||| || ||||| || ||||||||||||| ||||| || | | |||
Sbjct 78776 TCGGAGACGCAAGACGAGATGGAGGGTAGACTCCTTTTGGATATTGTAATCGGAAAGAGT 78717
Query 199468 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCC 199527
| |||||||| || || ||||||||||||||||| || ||||| || || || ||
Sbjct 78716 TCGGCCATCTTCAAGTTGTTTTCCGGCGAAGATGAGTCGTTGCTGATCAGGGGGGATACC 78657
Query 199528 TTCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587
|| || || ||||| ||| ||| |||| ||| || | | ||| || || |
Sbjct 78656 CTCCTTGTCTTGGATCTTGGCCTTGACGTTGTCGATGGTATCGCTCGATTCGACTTCAAG 78597
Query 199588 CGTGATCGTCTTACCCGTGAGA 199609
||||| ||||||||||| |||
Sbjct 78596 AGTGATTGTCTTACCCGTAAGA 78575
Score = 102 bits (112), Expect = 2e-16
Identities = 154/219 (70%), Gaps = 0/219 (0%)
Strand=Plus/Minus
Query 199408 TCGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGT 199467
||| || | || ||| || ||||| || ||||||||||||| ||||| || | | |||
Sbjct 77988 TCGGAGACGCAAGACGAGATGGAGGGTAGACTCCTTTTGGATATTGTAATCGGAAAGAGT 77929
Query 199468 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCC 199527
| |||||||| || || ||||||||||||||||| || ||||| || || || ||
Sbjct 77928 TCGGCCATCTTCAAGTTGTTTTCCGGCGAAGATGAGTCGTTGCTGATCAGGGGGGATACC 77869
Query 199528 TTCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587
|| || || ||||| ||| || |||| ||| || | |||| || || |
Sbjct 77868 CTCCTTGTCTTGGATCTTGGCCTTGACATTGTCGATGGTATCAGAGCTTTCGACTTCAAG 77809
Query 199588 CGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626
|| || || || || ||||| ||||| || || |||||
Sbjct 77808 GGTAATGGTTTTGCCGGTGAGGGTTTTGACGAAGATTTG 77770
Score = 100 bits (110), Expect = 7e-16
Identities = 127/175 (73%), Gaps = 0/175 (0%)
Strand=Plus/Minus
Query 199452 TGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCT 199511
|||| |||| |||||| | ||||||||||| ||||||||||||||||| | || || |
Sbjct 78172 TGTAATCAGACAAAGTTCGACCATCTTCCAGTTGCTTTCCGGCGAAGATCAATCGTTGTT 78113
Query 199512 GGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTG 199571
|||| ||| || || || ||||||||||| ||| || || | |||||| |
Sbjct 78112 GGTCAGGAGGGATACCCTCCTTGTCCTGAATCTTCGCCTTGACATTGTCAATGGTGTCAG 78053
Query 199572 TTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626
| ||| || || | ||||| ||||| || || ||||| || || ||||| ||
Sbjct 78052 AGGATTCAACCTCAAGAGTGATAGTCTTTCCGGTAAGAGTCTTGACGAAAATCTG 77998
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1178912733404329
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |