Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022221
55.1_202017-07-20] 587 sequences; 18,505,623 total letters
Query= NC_013772.1
Length=176677
Score E
Sequences producing significant alignments: (Bits) Value
seq449 109 6e-19
seq90 86.0 7e-12
>seq449
Length=79778
Score = 109 bits (120), Expect = 6e-19
Identities = 163/230 (71%), Gaps = 6/230 (3%)
Strand=Plus/Minus
Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426
|| |||| | |||||| || ||||| | ||| |||||||||||||||||| |||||
Sbjct 77993 CCACCTCGGAGACGCAAGACGAGATGGAGGGTAGACTCCTTTTGGATATTGTAATCGGAA 77934
Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486
||||| || | || || || || || |||||||| || | || ||||| || | ||
Sbjct 77933 AGAGTTCGGCCATCTTCAAGTTGTTTTCCGGCGAAGATGAGTCGTTGCTGATCAGGGGGG 77874
Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTC---GCTCGATTCC 46543
| | ||||||||| |||||| ||||| | | | || || ||| |||
Sbjct 77873 ATACCCTCCTTGTCTTGGATCTTGGCCTTGACATTGTCGATGGTATCAGAGCT---TTCG 77817
Query 46544 ACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593
|| || | || ||||||||||| || || ||||| || |||||||||||
Sbjct 77816 ACTTCAAGGGTAATGGTTTTGCCGGTGAGGGTTTTGACGAAGATTTGCAT 77767
Score = 109 bits (120), Expect = 6e-19
Identities = 150/207 (72%), Gaps = 2/207 (1%)
Strand=Plus/Minus
Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426
|| |||| | |||||| || ||||| | ||| |||||||||||||||||| |||||
Sbjct 78781 CCACCTCGGAGACGCAAGACGAGATGGAGGGTAGACTCCTTTTGGATATTGTAATCGGAA 78722
Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486
||||| || | || || || || || |||||||| || | || ||||| || | ||
Sbjct 78721 AGAGTTCGGCCATCTTCAAGTTGTTTTCCGGCGAAGATGAGTCGTTGCTGATCAGGGGGG 78662
Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCC-ACCGTGTCGCTCGATTCCAC 46545
| | ||||||||| |||||| ||||| ||| | | | || ||||||||||| ||
Sbjct 78661 ATACCCTCCTTGTCTTGGATCTTGGCCTTGA-CGTTGTCGATGGTATCGCTCGATTCGAC 78603
Query 46546 ATCCACCGTGATGGTTTTGCCCGTCAG 46572
|| | ||||| || || ||||| ||
Sbjct 78602 TTCAAGAGTGATTGTCTTACCCGTAAG 78576
Score = 93.3 bits (102), Expect = 5e-14
Identities = 138/193 (72%), Gaps = 2/193 (1%)
Strand=Plus/Minus
Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461
|||||||||||| ||||||||||| ||||| || | || || || || || || || ||
Sbjct 78465 CTCCTTTTGGATGTTGTAGTCGGAAAGAGTACGACCATCCTCCAGTTGTTTACCAGCAAA 78406
Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521
||||| || ||||| || | || | | ||||||||| |||||| ||| | |||
Sbjct 78405 AATCAATCGTTGCTGATCAGGAGGAATACCTTCCTTGTCCTGAATCTTCGCCTT-AACGT 78347
Query 46522 CG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAA 46580
| | | ||||| ||| || || || | ||||| || || || |||| || || |
Sbjct 78346 TGTCGATAGTGTCAGACGACTCGACTTCAAGAGTGATAGTCTTTCCGGTCAAAGTCTTGA 78287
Query 46581 CAAAGATTTGCAT 46593
||||||| |||||
Sbjct 78286 CAAAGATCTGCAT 78274
>seq90
Length=80925
Score = 86.0 bits (94), Expect = 7e-12
Identities = 113/157 (72%), Gaps = 0/157 (0%)
Strand=Plus/Plus
Query 46416 TGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCT 46475
||||||| || || || | |||| ||||||||||| |||||||| ||||| |||||||
Sbjct 51467 TGTAGTCAGAAAGGGTCCTGCCGTCCTCGAGCTGCTTTCCGGCGAAGATCAATCGCTGCT 51526
Query 46476 GGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGC 46535
|||| | || | | |||||||||| |||||| ||||| | | | ||||||
Sbjct 51527 GGTCAGGGGGGATACCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGG 51586
Query 46536 TCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAG 46572
|| || || || | |||||||| || || || ||
Sbjct 51587 AGGACTCGACCTCGAGGGTGATGGTCTTTCCGGTAAG 51623
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 565234252563240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |