Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022221 55.1_202017-07-20] 587 sequences; 18,505,623 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq449 114 5e-20 seq407 98.7 4e-15 >seq449 Length=79778 Score = 114 bits (126), Expect = 5e-20 Identities = 140/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || ||||| ||||| || || || ||||| ||||| ||||| || ||| ||| Sbjct 77767 ATGCAAATCTTCGTCAAAACCCTCACCGGCAAAACCATTACCCTTGAAGTCGAAAGCTCT 77826 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 |||| ||| || | | || || || ||||| ||||| || || || |||||||| Sbjct 77827 GATACCATCGACAATGTCAAGGCCAAGATCCAAGACAAGGAGGGTATCCCCCCTGATCAG 77886 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 ||||| | || ||| | || ||||||||||||||||| ||||| | | ||||| ||| Sbjct 77887 CAACGACTCATCTTCGCCGGAAAACAACTTGAAGATGGCCGAACTCTTTCCGATTACAAT 77946 Query 391230 ATTGATAAGGA 391240 || | ||||| Sbjct 77947 ATCCAAAAGGA 77957 Score = 102 bits (112), Expect = 3e-16 Identities = 145/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || || || || || |||| || || ||||| |||||||| || || || ||| Sbjct 78274 ATGCAGATCTTTGTCAAGACTTTGACCGGAAAGACTATCACTCTTGAAGTCGAGTCGTCT 78333 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || | || || |||| || ||||| || |||||||| |||||||||||||| Sbjct 78334 GACACTATCGACAACGTTAAGGCGAAGATTCAGGACAAGGAAGGTATTCCTCCTGATCAG 78393 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 ||||| || ||||| | || |||||||| || ||||| | ||| | | || || || Sbjct 78394 CAACGATTGATTTTTGCTGGTAAACAACTGGAGGATGGTCGTACTCTTTCCGACTACAAC 78453 Query 391230 ATTGATAAGGATGCAACACTTCAC 391253 || | ||||| | || |||||| Sbjct 78454 ATCCAAAAGGAGTCTACCCTTCAC 78477 Score = 95.1 bits (104), Expect = 5e-14 Identities = 120/165 (73%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | |||||||| || || || || ||||| ||||| |||||||| || || || || Sbjct 77488 ATGCAAATTTTCGTCAAGACTCTCACCGGTAAGACTATCACTCTTGAAGTGGAGTCTTCC 77547 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || | ||| || | | || || || ||||| ||||| || || |||||||| || Sbjct 77548 GACACCATCGACAATGTCAAGGCCAAGATCCAAGACAAGGAGGGTATCCCTCCTGACCAG 77607 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACT 391214 ||||| || || || | || || || ||||||||||| || ||| Sbjct 77608 CAACGATTGATCTTTGCTGGTAAGCAGCTTGAAGATGGCAGGACT 77652 Score = 91.5 bits (100), Expect = 6e-13 Identities = 122/170 (72%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 391071 CTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCTGATAACATTGAAGCTATTAAA 391130 || || ||||| || || |||||||| || ||||| |||| ||| || | || Sbjct 78576 CTTACGGGTAAGACAATCACTCTTGAAGTCGAATCGAGCGATACCATCGACAACGTCAAG 78635 Query 391131 CAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAACAACGTTTAATTTTCTCAGGG 391190 || || ||||| ||||| || || || |||||||| ||||| | || ||| | || Sbjct 78636 GCCAAGATCCAAGACAAGGAGGGTATCCCCCCTGATCAGCAACGACTCATCTTCGCCGGA 78695 Query 391191 AAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAATATTGATAAGGA 391240 ||||||||||||||||| ||||| | | ||||| ||||| | ||||| Sbjct 78696 AAACAACTTGAAGATGGCCGAACTCTTTCCGATTACAATATCCAAAAGGA 78745 >seq407 Length=11167 Score = 98.7 bits (108), Expect = 4e-15 Identities = 242/366 (66%), Gaps = 11/366 (3%) Strand=Plus/Minus Query 451244 CCTGAAGAAATTTCATCTATGGTTCTTACTAAAATGAAAGAAACAGCAGAACAATATATT 451303 |||||||| ||||| || |||||||||||||| ||||| ||||| || || || || Sbjct 464 CCTGAAGAGATTTCTTCCATGGTTCTTACTAAGATGAAGGAAACTGCTGAGGCTTACCTT 405 Query 451304 GGTTCTCCAGTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGG 451363 ||| | || | | || || | || || ||||| || ||||| || | ||||| Sbjct 404 GGTGGCACCGTCTCCAAGGCCGTTGTCACCGTCCCCGCCTACTTCAACGACTCTCAACGT 345 Query 451364 CAAGCAACTAAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAA 451423 || || || || || || || ||||| ||| | | || || || || || || || Sbjct 344 CAGGCTACCAAGGACGCTGGTGCCATTGCCGGTCTCGACGTCCTCCGTATCATCAACGAG 285 Query 451424 CCTACAGCAGCTGCTCTAGCATATGGACTAGGAAAATCAAAAGAA-ACAGA---AGaaaa 451479 ||||| || |||||| | || || || || | | ||||| | || || || Sbjct 284 CCTACTGCCGCTGCTATCGCTTACGGTCT-------TGACAAGAAGTCTGAGGGCGAGAA 232 Query 451480 aaaTATTTTAGTATTTGATTTTGGTGGAGGAACTCATGATACTTCTGTACTTTCAATTGA 451539 || |||| | || || ||||||| || ||| ||| ||| | | | ||||| Sbjct 231 GAACGTTTTGATCTTCGACCTTGGTGGTGGTACTTTCGATGTCTCTCTTTTGACTATTGA 172 Query 451540 AGATGGGGTATTTGAAGTAAAGGCAACCAATGGTGATACTCATCTAGGAGGTGAAGATAT 451599 || || | || || || ||||| ||| |||||| ||||| || || ||||| || | Sbjct 171 GGAGGGTATCTTCGAGGTCAAGGCTACCGCTGGTGACACTCACCTTGGTGGTGAGGACTT 112 Query 451600 TGATAA 451605 ||| || Sbjct 111 TGACAA 106 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1975703540745396