Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022221
55.1_202017-07-20] 587 sequences; 18,505,623 total letters
Query= NC_014637.1
Length=617453
Score E
Sequences producing significant alignments: (Bits) Value
seq449 114 5e-20
seq407 98.7 4e-15
>seq449
Length=79778
Score = 114 bits (126), Expect = 5e-20
Identities = 140/191 (73%), Gaps = 0/191 (0%)
Strand=Plus/Plus
Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109
||| | || ||||| ||||| || || || ||||| ||||| ||||| || ||| |||
Sbjct 77767 ATGCAAATCTTCGTCAAAACCCTCACCGGCAAAACCATTACCCTTGAAGTCGAAAGCTCT 77826
Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169
|||| ||| || | | || || || ||||| ||||| || || || ||||||||
Sbjct 77827 GATACCATCGACAATGTCAAGGCCAAGATCCAAGACAAGGAGGGTATCCCCCCTGATCAG 77886
Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229
||||| | || ||| | || ||||||||||||||||| ||||| | | ||||| |||
Sbjct 77887 CAACGACTCATCTTCGCCGGAAAACAACTTGAAGATGGCCGAACTCTTTCCGATTACAAT 77946
Query 391230 ATTGATAAGGA 391240
|| | |||||
Sbjct 77947 ATCCAAAAGGA 77957
Score = 102 bits (112), Expect = 3e-16
Identities = 145/204 (71%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109
||| | || || || || || |||| || || ||||| |||||||| || || || |||
Sbjct 78274 ATGCAGATCTTTGTCAAGACTTTGACCGGAAAGACTATCACTCTTGAAGTCGAGTCGTCT 78333
Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169
|| | || || |||| || ||||| || |||||||| ||||||||||||||
Sbjct 78334 GACACTATCGACAACGTTAAGGCGAAGATTCAGGACAAGGAAGGTATTCCTCCTGATCAG 78393
Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229
||||| || ||||| | || |||||||| || ||||| | ||| | | || || ||
Sbjct 78394 CAACGATTGATTTTTGCTGGTAAACAACTGGAGGATGGTCGTACTCTTTCCGACTACAAC 78453
Query 391230 ATTGATAAGGATGCAACACTTCAC 391253
|| | ||||| | || ||||||
Sbjct 78454 ATCCAAAAGGAGTCTACCCTTCAC 78477
Score = 95.1 bits (104), Expect = 5e-14
Identities = 120/165 (73%), Gaps = 0/165 (0%)
Strand=Plus/Plus
Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109
||| | |||||||| || || || || ||||| ||||| |||||||| || || || ||
Sbjct 77488 ATGCAAATTTTCGTCAAGACTCTCACCGGTAAGACTATCACTCTTGAAGTGGAGTCTTCC 77547
Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169
|| | ||| || | | || || || ||||| ||||| || || |||||||| ||
Sbjct 77548 GACACCATCGACAATGTCAAGGCCAAGATCCAAGACAAGGAGGGTATCCCTCCTGACCAG 77607
Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACT 391214
||||| || || || | || || || ||||||||||| || |||
Sbjct 77608 CAACGATTGATCTTTGCTGGTAAGCAGCTTGAAGATGGCAGGACT 77652
Score = 91.5 bits (100), Expect = 6e-13
Identities = 122/170 (72%), Gaps = 0/170 (0%)
Strand=Plus/Plus
Query 391071 CTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCTGATAACATTGAAGCTATTAAA 391130
|| || ||||| || || |||||||| || ||||| |||| ||| || | ||
Sbjct 78576 CTTACGGGTAAGACAATCACTCTTGAAGTCGAATCGAGCGATACCATCGACAACGTCAAG 78635
Query 391131 CAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAACAACGTTTAATTTTCTCAGGG 391190
|| || ||||| ||||| || || || |||||||| ||||| | || ||| | ||
Sbjct 78636 GCCAAGATCCAAGACAAGGAGGGTATCCCCCCTGATCAGCAACGACTCATCTTCGCCGGA 78695
Query 391191 AAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAATATTGATAAGGA 391240
||||||||||||||||| ||||| | | ||||| ||||| | |||||
Sbjct 78696 AAACAACTTGAAGATGGCCGAACTCTTTCCGATTACAATATCCAAAAGGA 78745
>seq407
Length=11167
Score = 98.7 bits (108), Expect = 4e-15
Identities = 242/366 (66%), Gaps = 11/366 (3%)
Strand=Plus/Minus
Query 451244 CCTGAAGAAATTTCATCTATGGTTCTTACTAAAATGAAAGAAACAGCAGAACAATATATT 451303
|||||||| ||||| || |||||||||||||| ||||| ||||| || || || ||
Sbjct 464 CCTGAAGAGATTTCTTCCATGGTTCTTACTAAGATGAAGGAAACTGCTGAGGCTTACCTT 405
Query 451304 GGTTCTCCAGTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGG 451363
||| | || | | || || | || || ||||| || ||||| || | |||||
Sbjct 404 GGTGGCACCGTCTCCAAGGCCGTTGTCACCGTCCCCGCCTACTTCAACGACTCTCAACGT 345
Query 451364 CAAGCAACTAAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAA 451423
|| || || || || || || ||||| ||| | | || || || || || || ||
Sbjct 344 CAGGCTACCAAGGACGCTGGTGCCATTGCCGGTCTCGACGTCCTCCGTATCATCAACGAG 285
Query 451424 CCTACAGCAGCTGCTCTAGCATATGGACTAGGAAAATCAAAAGAA-ACAGA---AGaaaa 451479
||||| || |||||| | || || || || | | ||||| | || || ||
Sbjct 284 CCTACTGCCGCTGCTATCGCTTACGGTCT-------TGACAAGAAGTCTGAGGGCGAGAA 232
Query 451480 aaaTATTTTAGTATTTGATTTTGGTGGAGGAACTCATGATACTTCTGTACTTTCAATTGA 451539
|| |||| | || || ||||||| || ||| ||| ||| | | | |||||
Sbjct 231 GAACGTTTTGATCTTCGACCTTGGTGGTGGTACTTTCGATGTCTCTCTTTTGACTATTGA 172
Query 451540 AGATGGGGTATTTGAAGTAAAGGCAACCAATGGTGATACTCATCTAGGAGGTGAAGATAT 451599
|| || | || || || ||||| ||| |||||| ||||| || || ||||| || |
Sbjct 171 GGAGGGTATCTTCGAGGTCAAGGCTACCGCTGGTGACACTCACCTTGGTGGTGAGGACTT 112
Query 451600 TGATAA 451605
||| ||
Sbjct 111 TGACAA 106
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1975703540745396
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |