Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022221 55.1_202017-07-20] 587 sequences; 18,505,623 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq407 190 3e-43 seq404 172 7e-38 seq405 152 7e-32 seq185 143 3e-29 seq68 123 3e-23 >seq407 Length=11167 Score = 190 bits (210), Expect = 3e-43 Identities = 257/358 (72%), Gaps = 0/358 (0%) Strand=Plus/Plus Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 || || || |||||||| | ||| || || || ||||| || ||||| || |||||||| Sbjct 109 TCAAAGTCCTCACCACCAAGGTGAGTGTCACCAGCGGTAGCCTTGACCTCGAAGATACCC 168 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576 | ||||| | || | || ||||| || ||||||||||| ||||| || || | ||| Sbjct 169 TCCTCAATAGTCAAAAGAGAGACATCGAAAGTACCACCACCAAGGTCGAAGATCAAAACG 228 Query 7577 TTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCA 7636 ||| | ||| | || ||||| || |||||||| |||||||| || || || || || Sbjct 229 TTCTTCTCGCCCTCAGACTTCTTGTCAAGACCGTAAGCGATAGCAGCGGCAGTAGGCTCG 288 Query 7637 TTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGT 7696 || || ||||| || || || || ||||| | | || || || || || || ||| Sbjct 289 TTGATGATACGGAGGACGTCGAGACCGGCAATGGCACCAGCGTCCTTGGTAGCCTGACGT 348 Query 7697 TGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGA 7756 || || ||||| |||||||| ||||| || || || || | | ||| | ||| || Sbjct 349 TGAGAGTCGTTGAAGTAGGCGGGGACGGTGACAACGGCCTTGGAGACGGTGCCACCAAGG 408 Query 7757 TACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCG 7814 || | || || | || ||||| || ||||||||||| || ||||||||||||| || Sbjct 409 TAAGCCTCAGCAGTTTCCTTCATCTTAGTAAGAACCATGGAAGAAATCTCTTCAGGCG 466 Score = 91.5 bits (100), Expect = 2e-13 Identities = 141/201 (70%), Gaps = 3/201 (1%) Strand=Plus/Plus Query 7876 GATAACCTTATACGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAACTTTCT 7935 ||| ||||| | | ||||| ||||| ||| | || || | || |||||| | Sbjct 582 GATTACCTTGAAAGGCCAATGCTTCATGTCGGCCTGAACTTCGGCATCGTTAAACTTACG 641 Query 7936 TCCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTT 7995 ||||| | ||||| ||||| ||||| ||||| | || ||||| || ||||||||| Sbjct 642 GCCGATCAACCGCTTAGCATCGAAAACAGTGTTGTAAGGATTCATTGCAACTTGGTTCTT 701 Query 7996 CGCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGGGTCGT 8055 ||| || || |||||||| ||||| | || | || || || || ||||| || || Sbjct 702 CGCGGCATCACCGATAAGTCGTTC---AGAGTCATTGAAAGCAACATATGATGGTGTTGT 758 Query 8056 TCGATTCCCTTGGTCGTTCGC 8076 |||||| || || ||||| || Sbjct 759 TCGATTGCCCTGATCGTTGGC 779 Score = 86.0 bits (94), Expect = 8e-12 Identities = 70/85 (82%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 8076 CAATAATTTCTACGCGGTCGTTTTGCCAGACGCCGACGCACGAATACGTTGTTCCTAAAT 8135 ||||||||||||| |||||||||||||||||| | || || ||||| || || || || | Sbjct 834 CAATAATTTCTACCCGGTCGTTTTGCCAGACGGCAACACAAGAATAGGTAGTGCCCAAGT 893 Query 8136 CAATACCGATTGCTTGAGTCATTTT 8160 | |||||||| |||| ||||| || Sbjct 894 CGATACCGATAGCTTTTGTCATGTT 918 >seq404 Length=6840 Score = 172 bits (190), Expect = 7e-38 Identities = 250/353 (71%), Gaps = 0/353 (0%) Strand=Plus/Minus Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 || || || |||||||| | ||| || || || ||||| || ||||| || |||||||| Sbjct 6828 TCAAAGTCCTCACCACCAAGGTGAGTGTCACCAGCGGTAGCCTTGACCTCGAAGATACCC 6769 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576 | ||||| | || | || ||||| || ||||||||||| ||||| || || | ||| Sbjct 6768 TCCTCAATAGTCAAAAGAGAGACATCGAAAGTACCACCACCAAGGTCGAAGATCAAAACG 6709 Query 7577 TTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCA 7636 ||| | ||| | || ||||| || |||||||| |||||||| || || || || || Sbjct 6708 TTCTTCTCGCCCTCAGACTTCTTGTCAAGACCGTAAGCGATAGCAGCGGCAGTAGGCTCG 6649 Query 7637 TTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGT 7696 || || ||||| || || || || ||||| | | || || || || || || ||| Sbjct 6648 TTGATGATACGGAGGACGTCGAGACCGGCAATGGCACCAGCGTCCTTGGTAGCCTGACGT 6589 Query 7697 TGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGA 7756 || || ||||| |||||||| ||||| || || || || | | ||| | ||| || Sbjct 6588 TGAGAGTCGTTGAAGTAGGCGGGGACGGTAACAACGGCCTTGGAGACGGTGCCACCAAGG 6529 Query 7757 TACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTC 7809 || | || || | || ||||| ||| |||| ||||| || || || ||||| Sbjct 6528 TAAGCCTCAGCAGTCTCCTTCATCTTGATAAGGACCATGGAAGAGATTTCTTC 6476 Score = 89.7 bits (98), Expect = 7e-13 Identities = 140/200 (70%), Gaps = 3/200 (2%) Strand=Plus/Minus Query 7877 ATAACCTTATACGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAACTTTCTT 7936 || ||||| | | ||| | ||||| ||| | || |||| ||| |||||||| Sbjct 6358 ATGACCTTGAAAGGCCAGTGCTTCATGTCGGCCTGAACCTCAGCATCCTCAAACTTTCGG 6299 Query 7937 CCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTC 7996 || || | ||||| || || ||||| ||||| | ||||||||||| |||||||| Sbjct 6298 CCAATCAATCGCTTGGCGTCGAAAACAGTGTTGTAAGGGTTCATGGCGACCTGGTTCTTG 6239 Query 7997 GCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGGGTCGTT 8056 || ||||| ||||| | || || | || | || |||||||| || || || ||| Sbjct 6238 GCAGCGTCACCGATCAATCGCTC---AGAGTCGTTGAAAGCGACGTAAGAGGGAGTGGTT 6182 Query 8057 CGATTCCCTTGGTCGTTCGC 8076 || || || ||||||||||| Sbjct 6181 CGGTTACCCTGGTCGTTCGC 6162 >seq405 Length=27628 Score = 152 bits (168), Expect = 7e-32 Identities = 195/269 (72%), Gaps = 0/269 (0%) Strand=Plus/Minus Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 || || || |||||||| | ||| || || || ||||| || ||||| || |||||||| Sbjct 269 TCAAAGTCCTCACCACCAAGGTGAGTGTCACCAGCGGTAGCCTTGACCTCGAAGATACCC 210 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576 | ||||| | || | || ||||| || ||||||||||| ||||| || || | ||| Sbjct 209 TCCTCAATAGTCAAAAGAGAGACATCGAAAGTACCACCACCAAGGTCGAAGATCAAAACG 150 Query 7577 TTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCA 7636 ||| | ||| | || ||||| || |||||||| |||||||| || || || || || Sbjct 149 TTCTTCTCGCCCTCAGACTTCTTGTCAAGACCGTAAGCGATAGCAGCGGCAGTAGGCTCG 90 Query 7637 TTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGT 7696 || || ||||| || || || || ||||| | | || || || || || || ||| Sbjct 89 TTGATGATACGGAGGACGTCGAGACCGGCAATGGCACCAGCGTCCTTGGTAGCCTGACGT 30 Query 7697 TGCGAATCGTTAAAGTAGGCCGGGACCGT 7725 || || ||||| |||||||| ||||| || Sbjct 29 TGAGAGTCGTTGAAGTAGGCGGGGACGGT 1 >seq185 Length=108970 Score = 143 bits (158), Expect = 3e-29 Identities = 706/1115 (63%), Gaps = 23/1115 (2%) Strand=Plus/Minus Query 104870 CCCACATATCGAATTGAAGAATACCTTTACTAAACGGTGACCCCTTAAACGTTTCATAAG 104929 ||||||| ||| | ||||| ||||| ||| | || || || | | | |||||| | Sbjct 95671 CCCACATGTCGTACTGAAGGATACCCTTAGAGATGGGAGAACCTTCGTAAGATTCATAGG 95612 Query 104930 GACCGTACATTTCGGCAAGTTCACACGACGATTCGAGTGATGCGTGGTAGATAGTTTCGA 104989 ||| || ||||||||||| ||||||| || |||| |||||||| || || |||| Sbjct 95611 TACCAAACTCCTCGGCAAGTTCGCACGACGCCTCAAGTGCCGCGTGGTATATCGTCTCGA 95552 Query 104990 ATATATCAATGTTGAGTTTTCTCGATTCTTCTGAACCGAATGTCATTCTTAACATGATAA 105049 | || | || ||||||| || | || | || |||| | ||| | | || | Sbjct 95551 AGATCTGGATATTGAGTTCCCTAGCCTCAGCGGAGTCGAACGGCATGCGAAGGGCCATGA 95492 Query 105050 ACACGTCAGCGAGACCCTGAACACCAATACCGATGGGTCTGTGACGCATATTTGAACGTT 105109 | |||| || |||||||| ||||||| ||| | |||| || ||||| || || ||| Sbjct 95491 AAGCGTCGGCAAGACCCTGGACACCAAGACCAACAGGTCGATGGCGCATGTTGGA--GTT 95434 Query 105110 TCCCGTTTTCGGT--TGGGTAAAAGTTTTTATCAATAACCTTGTTTAAGTTACGTGTAAC 105167 | | | || ||| || |||| || || ||| | ||| |||||| Sbjct 95433 GCGGGCCTCAGGCACTGGATAGTAGTTACGGGTGATTACAGTGTCAAGGTTCTTTGTAAC 95374 Query 105168 CATTTTCGTAA-CACGATGTAACTCTTCATGGT--TAAACTCGTTCTTCTCGACATCAAC 105224 | || |||| | || || | || || || || || || ||| | || || Sbjct 95373 AACCTTGGTAATCTCG-TGCAGCTTTTTGAAGTCATAGACGCGACGTTCAAGG--TCTAC 95317 Query 105225 GTATTTTGGTAACGCGATTGATGCGAGATTACATACGGCGGTTTCTTCCTTATCCGTAAA 105284 | | || | || | || || |||||||| || || ||| || | | | | Sbjct 95316 GAAGGCAGGAAGAGCAAGAGAAGCAAGATTACAGACAGCAACTTCATCAGGAGAAGAATA 95257 Query 105285 CTCCAGAATTTCTGTACACAAATTTGATGATTTAATCGTACCAACGTGTTTATGGTTCGA 105344 ||||| ||||| ||||| | || ||||| || ||||||| ||| || ||||| || Sbjct 95256 CTCCATGATTTCAGTACAGAGGTTACTGGATTTGATGGTACCAAGGTGCTTTTGGTTGGA 95197 Query 105345 CTTTTCATTACACGCGTCTTTGTAAAGCATATATGGGGTTCCCGTTTCACTTTGGGATTT 105404 ||| || || || ||||| || || ||| || || || |||| | | Sbjct 95196 CTTGGAGTTGGCAGCATCCTTGTAGCAGATGTAAGGGACACCAGTCTCGGTTTGAGCCTC 95137 Query 105405 AATAATTGCTTTCCAAATCTCCGAAGCTGGTACAACTTTAGTTGCGATACCTTCAGATTC 105464 | || || ||||| || | ||| | | ||| || | | || | || Sbjct 95136 GAGGATGGCGAACCAAAGCTTCTGGGCTTTGATAGTTTTCCTTCCCTTGCCCTGCCTCTC 95077 Query 105465 GTATTTCTCGTAAAGATCTTCAAACTCTTTACCGTACACGTCTGAAAGACCCTTTGCCTG 105524 ||| |||| ||||| | |||||| |||| |||||| ||||| | ||| || || Sbjct 95076 GTAGCTCTCATAAAGCTTTTCAAATTCTTCACCGTAAACGTCGGCAAGTCCAGGGCACTC 95017 Query 105525 ATCAGGACAAAACAATGACCAATTACCATCGGATTCAACGCGTTTCATGAACAAATCTGG 105584 | ||||| | | | ||||| ||||||||||| || || |||||||| | ||| | Sbjct 95016 GGCGGGACACATAAGAGTCCAATCCCCATCGGATTCGACACGCTTCATGAAAAGATCGGA 94957 Query 105585 AATCCACATGGCTGAAAAGAGGTCTCGACACCTCG--CCTCTTCATCACCTTGATTCAAA 105642 ||||| | ||| | || || || ||| |||| |||| || | ||| || ||| Sbjct 94956 GATCCAGAGGGCGTAGAAAAGATCACGAG--CTCGTACCTCCTCCTTACCATGGTTCTTC 94899 Query 105643 CGAATTTCGAGAAAATCGAGAATATCGGCGTGCCATGGTTCTAAATAGACTGCAATAGAC 105702 | | || | || || | | ||| |||||||| || || | ||||| || | | Sbjct 94898 CTTAAGTCAATGAAGTCAAATACATCAGCGTGCCAAGGCTCAAGATAGATGGCGAAGGCA 94839 Query 105703 CCTTTACGACGC------CCCGCTTGATTGACATATCTTGCGGTTGAGTTATACACTCGT 105756 || | ||||| || |||||| || |||| || || | || || |||| Sbjct 94838 CC---AGGACGCTTGTTACCACCTTGATCAACGTATCGAGCTGTGGCGTCGTAAGCTCGG 94782 Query 105757 AACATTGGAATAATACCATCGGATGTTCCATTTGTTCCACGAATATGTGATTTATTTGCA 105816 | ||| ||||| || || | ||| ||||| || || ||| | || || ||| Sbjct 94781 AGCATAGGAATGATGCCGTTGGAGTAACCATTGGTACCGGCAATGTAGGAGCCCTTCGCA 94722 Query 105817 CGTACATCGTGAACGTGTAACCCAATACCCCCAGCCCACTTACTGATACGCGCACACTCT 105876 || | || ||||| ||| | |||||||| || || ||| ||| | ||||| Sbjct 94721 CGGATATTGTGAATGTGAAGACCAATACCACCGGCAGTCTTGGAGATCTGAGCACAGGTC 94662 Query 105877 TTTACTGTATCGTAAATACCGTCGATACTATCTTCCTTATTCGCAATCAGGAAACACGAT 105936 || | |||||||| ||||| || || || ||||| | || | ||||| || ||| Sbjct 94661 TTGAGAGTATCGTAGATACCATCAATGGAGTCATCCTTCATGGCCACGAGGAAGCATGAT 94602 Query 105937 GACATTTGTGGTCTGGGTGTACCAGCATTGAACAG 105971 |||||||| |||| ||| ||||| || ||||| || Sbjct 94601 GACATTTGGGGTCGGGGAGTACCGGCGTTGAAAAG 94567 >seq68 Length=33655 Score = 123 bits (136), Expect = 3e-23 Identities = 267/395 (68%), Gaps = 6/395 (2%) Strand=Plus/Minus Query 7331 GAAGATAACGTTCGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGG 7390 ||||| | |||||||| || |||||||| || | || || || || | ||||| | | Sbjct 15185 GAAGAGAGAGTTCGCTTAGCACGCTCACAAGCAGATCTCAATCGTCGCAAAGCACGGGCG 15126 Query 7391 TTACCGGAAATATCTTTCTTATGTTTACGTTTAAACTCTTCAGAGAAGTGTCGAAGGAGT 7450 | | || || || ||| || | || ||||| | |||||| |||||| Sbjct 15125 TCGTCAGAGATGTCAAGCTTGGTCTTCCTCTTGAACTCAGCCTTGAAGTGCTCAAGGAGG 15066 Query 7451 CTCGAATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAG 7510 | ||||| || |||||||| | || || || || || || || ||||| ||| Sbjct 15065 TTGTTGTCGAAGTCCTCACCACCAAGATGAGTGTCACCAGCAGTGGCCTTGACAGAGAAG 15006 Query 7511 ATACCT--CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAA 7568 | ||| || | |||| | | | || ||||| || ||||||||||||| ||| || | Sbjct 15005 A--CCTTGCCCTGAATGGTAAGAAGAGAGACATCGAAAGTACCACCACCCAAGTCGAAGA 14948 Query 7569 TGAGTACGTTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCG 7628 |||| ||||| || || || | |||| || |||||||| || ||||| || || | Sbjct 14947 TGAGGACGTTTCGCTCCTCCTCAGTCTTCTCGTCAAGACCGTAGGCAATAGCGGCAGCAG 14888 Query 7629 TTGGTTCATTAATAATACGAAGACAGTTC-AGGCCAGCAATAGTTGCCGCATCTTTCGTC 7687 | ||||| || |||||||| || || || || || ||||| | | || || || || Sbjct 14887 TAGGTTCGTTGATAATACGGAG-CACCTCAAGACCGGCAATGGCACCGGCGTCCTTAGTG 14829 Query 7688 GCTTGTCGTTGCGAATCGTTAAAGTAGGCCGGGAC 7722 || | || || || ||||| |||||||| || || Sbjct 14828 GCGAGACGCTGAGAGTCGTTGAAGTAGGCAGGAAC 14794 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635128139713080