Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022221 55.1_202017-07-20] 587 sequences; 18,505,623 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq185 178 2e-39 seq449 165 1e-35 seq90 107 2e-18 >seq185 Length=108970 Score = 178 bits (196), Expect = 2e-39 Identities = 724/1122 (65%), Gaps = 37/1122 (3%) Strand=Plus/Plus Query 111726 CTCTTCAACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACAAG 111785 || |||||||| ||||| || ||||||||||||| || ||||| | || | ||| Sbjct 94567 CTTTTCAACGCCGGTACTCCCCGACCCCAAATGTCATCATGCTTCCTCGTGGCCATGAAG 94626 Query 111786 GAGGATTCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTGG 111845 || || || || |||| || |||| ||||||| ||||| || ||||| ||| Sbjct 94627 GATGACTCCATTGATGGTATCTACGATACTCTCAAGACCTGTGCTCAGATCTCCAAGACT 94686 Query 111846 GCTGGTGGTATCGGGATGCACATCCATGATGTCAGAGCCAACAAGTCTCGTA--TTAGAG 111903 || |||||||| || | ||||| || || || | || || | ||| || || | Sbjct 94687 GCCGGTGGTATTGGTCTTCACATTCACAATATCCGTGCGAAG--GGCTCCTACATTGCCG 94744 Query 111904 GTACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGC 111963 |||| |||||| | || | || || ||||| ||||| || | | |||||||||| | Sbjct 94745 GTACCAATGGTTACTCCAACGGCATCATTCCTATGCTCCGAGCTTACGACGCCACAGCTC 94804 Query 111964 GCTATGTAAACCAAGCTGGGCGTCGCAAGGGATCTA------TCGCAGTCTATCTTGAGC 112017 | || || | |||| ||| | |||| | || |||| |||||||||||| Sbjct 94805 GATACGTTGATCAAGGTGG---TAACAAGCGTCCTGGTGCCTTCGCCATCTATCTTGAGC 94861 Query 112018 CATGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGG 112077 | |||||||| ||| | | || ||| |||| || | ||||| ||| | ||||||| Sbjct 94862 CTTGGCACGCTGATGTATTTGACTTCATTGACTTAAGGAAGAACCATGGTAAGGAGGAGG 94921 Query 112078 CGCGGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTG 112137 || || ||||| |||| ||| |||||||| | ||||| ||||||||| | || | Sbjct 94922 TACGAGCTCGTGATCTTTTCTACGCCCTCTGGATCTCCGATCTTTTCATGAAGCGTGTCG 94981 Query 112138 AGGAGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGATGCCG 112197 | ||| ||||| |||| | ||||| | | || || || || |||| | Sbjct 94982 AATCCGATGGGGATTGGACTCTTATGTGTCCCGCCGAGTGCCCTGGACTTGCCGACGTTT 95041 Query 112198 TGGGTGAGGAGTTTGAAGCCCTCTACACAAAGTACGAGGAAGAAAGTCGGGCGACTG-CG 112256 ||||| || |||||| || || | ||||| || | | | | | || | Sbjct 95042 ACGGTGAAGAATTTGAAAAGCTTTATGAGAGCTACGA-GAGGCAGGGCAAGGGAAGGAAA 95100 Query 112257 ACGGTGCCAGCTGCCGATG-TGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTAC 112315 || | ||| | || | | ||| || || ||| || ||||||||||||||||| Sbjct 95101 ACTATCAAAGC-CCAGAAGCTTTGGTTCGCCATCCTCGAGGCTCAAACCGAGACTGGTGT 95159 Query 112316 ACCATATATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGT 112375 || || || ||||| || || ||| ||| || |||||| | | ||| Sbjct 95160 CCCTTACATCTGCTACAAGGATGCTGCCAACTCCAAGTCCAACCAAAAGCACCTTGGTAC 95219 Query 112376 GATCAA---GAGTTCCAACCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGAC 112432 ||||| ||| ||||||||||| |||||| |||| | | | ||||| Sbjct 95220 CATCAAATCCAGT---AACCTCTGTACTGAAATCATGGAGTATTCTTCTCCTGATGAAGT 95276 Query 112433 GGCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAG-A 112491 ||||| ||||| || || || | ||||| || | || || | || || | Sbjct 95277 TGCTGTCTGTAATCTTGCTTCTCTTGCTCTTCCTGCCTTCGTAGACCTTGA-ACGTCGCG 95335 Query 112492 CATTTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACAAAAAACCTAAACAGAG 112551 | ||| | |||| || ||||| |||| || ||| ||||| ||||| ||| | Sbjct 95336 TCTATGACTTCAAAAAGCTGCACGAGATTACCAAGGTTGTTACAAAGAACCTTGACACTG 95395 Query 112552 TTATTGATAGAAATTTTTACCCCGT---TGAGACTGCTCGTAAATCTAATATGAGACACC 112608 | || | || | || || || |||| || || || || || ||| | || | Sbjct 95396 TAATCACCCGTAACTACTATCCAGTGCCTGAG---GCCCGCAACTCCAACATGCGCCATC 95452 Query 112609 GTCCAATTGGTCTCGGTGTCCAAGGTCTCGCGGATGTATTCATTCTTTGTCGCCACGCAT 112668 | || ||||||| |||||||| ||||| || || | ||||| |||| | | Sbjct 95453 GACCTGTTGGTCTTGGTGTCCAGGGTCTTGCCGACGCTTTCATGGCCCTTCGCATGCCGT 95512 Query 112669 TTGATTCCGACGAAGCGAAGGAAATCAATGCGCGTATATTTGAGACAATGTATCACGCCG 112728 | || |||| || || | |||| ||||| | || || ||||| || || ||||| | Sbjct 95513 TCGACTCCGCTGAGGCTAGGGAACTCAATATCCAGATCTTCGAGACGATATACCACGCGG 95572 Query 112729 CTCTTGAGGCG-AGTTCGGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGT 112787 | ||||||||| || || | || || |||| |||| | |||||| | | || ||| Sbjct 95573 CACTTGAGGCGTCGTGCGAACTT-GCCGAGGAGTTTGGTACCTATGAATCTTACGAAGGT 95631 Query 112788 TCTCCAGCTTCAC-AAGGG-GTGCTTCAATTTGATATGTGGG 112827 ||||| | || | ||||| | ||||| | || ||||||| Sbjct 95632 TCTCC--CATCTCTAAGGGTATCCTTCAGTACGACATGTGGG 95671 >seq449 Length=79778 Score = 165 bits (182), Expect = 1e-35 Identities = 215/289 (74%), Gaps = 10/289 (3%) Strand=Plus/Minus Query 102048 CTCATAGACAAGTATATTAAGGATGGTGCTGAGAAGAAGCAGC-TCTTTGAAGCCATCCA 102106 ||||| |||| || |||||||| |||| || ||| | | ||||||| || || | Sbjct 63835 CTCATCGACACCTACATTAAGGACACTGCTC-GACGAAACTTCCTCTTTGACGCTATGGA 63777 Query 102107 AACAGTTCCATGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTT---TGATACAAA 102163 || |||| ||||| | |||||| || || |||||| | ||| | ||| ||| Sbjct 63776 CACCATTCCTTGTATCCGAAAGAAGGCCGACTGGGCTCTTCGATGGATCTCTGACCAAAA 63717 Query 102164 GTCGCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTC 102223 || ||| | || ||||||||| | || ||||| || ||||||||||||||||| Sbjct 63716 ATCTTGTTTCG--GC-GAGCGACTCATTGCTTTTGCTGCCGTGGAGGGTATCTTCTTCTC 63660 Query 102224 TGGTTCCTTCTGCG-CTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCT 102282 |||||| ||| ||| | || | ||||| |||||||||||||||||||| |||||| || Sbjct 63659 TGGTTCTTTC-GCGTCCATCTTCTGGCTTAAGAAGCGAGGTCTCATGCCTGGTCTCACCT 63601 Query 102283 TCTCCAACGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 102331 |||| |||||||| |||||||| |||||||| |||||| || ||||| Sbjct 63600 TCTCTAACGAGCTCATCTCTCGAGACGAGGGTCTCCACACCGACTTTGC 63552 >seq90 Length=80925 Score = 107 bits (118), Expect = 2e-18 Identities = 283/427 (66%), Gaps = 4/427 (1%) Strand=Plus/Plus Query 175840 ACCCGTACCGATACCCTCTGTACCGTTCACGAGAACCATGGGGAGTGTTGGCATGTAGAA 175899 ||| ||||||||||| |||| ||| || | | ||||| || | || |||||| | | Sbjct 70451 ACCAGTACCGATACCATCTGCACCATTGATCAATACCATTGGAACGGTGGGCATGAAATA 70510 Query 175900 GTCTGGCTCAATGGGGCGACCATCGTCATCCAAATAGTTGAGAATTGGATCATCTCTCGG 175959 ||||| |||||| | |||||| || |||| |||||||| | |||||| || Sbjct 70511 ATCTGGTTCAATGCGCATACCATCCTCGACCAAGTAGTTGAGCAACCCGTCATCTGCAGG 70570 Query 175960 ATCAAAGATCTTTCG-GGCATCTTTTGTGAGCTTTGTAAAGATATACCTCGTTTGAGACG 176018 | ||||| ||| | |||| || || ||||| |||||||| | | || | Sbjct 70571 GTGGAAGATTGCTCGAGTCATC-CGTGGAAGGTTTGTGAAGATATAACGAGCAGAAGCTG 70629 Query 176019 CATCCTTACCACCCATGAGACGCGTACCAAACTGACCACACGGCTCAAGAAGATTGATAT 176078 | || |||||||| ||||| |||||||| || || || || || |||||||| | Sbjct 70630 CGTCTTTACCACCTGCAAGACGAGTACCAAATTGGCCGTTGGGATCCAGCAGATTGATGT 70689 Query 176079 TGTTTGAACCCATGTAGTCATTCGCCAACTTGACAATCGTGTCCGCGAGAGAGACTTCAC 176138 |||| || | | ||| | || || |||||| ||| | | | | |||||| Sbjct 70690 TGTTACTGCCGACGAAGTTTTGTGCTAAACCGACAATGGTGGAAGTCAAACTGGCTTCAC 70749 Query 176139 CGTGGTGGTACGCACTCTTCTCTGCGACAAATGCCGCCAA-CTGCGCCACTTTCATCTCA 176197 | |||||||| || | ||||| | || | |||| ||| ||| || || || || || Sbjct 70750 CATGGTGGTATGCGGTTTTCTCCGAAACGTA-GCCGGCAAGCTGAGCGACCTTGATTTCT 70808 Query 176198 TCCTTGAGATTCTTGTGGAAACATGCGTACATAACCTTGCGTTGCGAAGGCTTGAGACCA 176257 | |||| || | |||||| | | | |||||| || || ||| |||||||| Sbjct 70809 TTGGTGAGGTTTCGCTTGAAACAACCAAAGAGAACCTTTCGCTGACCAGGTTTGAGACCG 70868 Query 176258 TCCGCCA 176264 || |||| Sbjct 70869 TCGGCCA 70875 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620737845302640