Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022221
55.1_202017-07-20] 587 sequences; 18,505,623 total letters
Query= NC_014766.1
Length=194022
Score E
Sequences producing significant alignments: (Bits) Value
seq185 178 2e-39
seq449 165 1e-35
seq90 107 2e-18
>seq185
Length=108970
Score = 178 bits (196), Expect = 2e-39
Identities = 724/1122 (65%), Gaps = 37/1122 (3%)
Strand=Plus/Plus
Query 111726 CTCTTCAACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACAAG 111785
|| |||||||| ||||| || ||||||||||||| || ||||| | || | |||
Sbjct 94567 CTTTTCAACGCCGGTACTCCCCGACCCCAAATGTCATCATGCTTCCTCGTGGCCATGAAG 94626
Query 111786 GAGGATTCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTGG 111845
|| || || || |||| || |||| ||||||| ||||| || ||||| |||
Sbjct 94627 GATGACTCCATTGATGGTATCTACGATACTCTCAAGACCTGTGCTCAGATCTCCAAGACT 94686
Query 111846 GCTGGTGGTATCGGGATGCACATCCATGATGTCAGAGCCAACAAGTCTCGTA--TTAGAG 111903
|| |||||||| || | ||||| || || || | || || | ||| || || |
Sbjct 94687 GCCGGTGGTATTGGTCTTCACATTCACAATATCCGTGCGAAG--GGCTCCTACATTGCCG 94744
Query 111904 GTACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGC 111963
|||| |||||| | || | || || ||||| ||||| || | | |||||||||| |
Sbjct 94745 GTACCAATGGTTACTCCAACGGCATCATTCCTATGCTCCGAGCTTACGACGCCACAGCTC 94804
Query 111964 GCTATGTAAACCAAGCTGGGCGTCGCAAGGGATCTA------TCGCAGTCTATCTTGAGC 112017
| || || | |||| ||| | |||| | || |||| ||||||||||||
Sbjct 94805 GATACGTTGATCAAGGTGG---TAACAAGCGTCCTGGTGCCTTCGCCATCTATCTTGAGC 94861
Query 112018 CATGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGG 112077
| |||||||| ||| | | || ||| |||| || | ||||| ||| | |||||||
Sbjct 94862 CTTGGCACGCTGATGTATTTGACTTCATTGACTTAAGGAAGAACCATGGTAAGGAGGAGG 94921
Query 112078 CGCGGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTG 112137
|| || ||||| |||| ||| |||||||| | ||||| ||||||||| | || |
Sbjct 94922 TACGAGCTCGTGATCTTTTCTACGCCCTCTGGATCTCCGATCTTTTCATGAAGCGTGTCG 94981
Query 112138 AGGAGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGATGCCG 112197
| ||| ||||| |||| | ||||| | | || || || || |||| |
Sbjct 94982 AATCCGATGGGGATTGGACTCTTATGTGTCCCGCCGAGTGCCCTGGACTTGCCGACGTTT 95041
Query 112198 TGGGTGAGGAGTTTGAAGCCCTCTACACAAAGTACGAGGAAGAAAGTCGGGCGACTG-CG 112256
||||| || |||||| || || | ||||| || | | | | | || |
Sbjct 95042 ACGGTGAAGAATTTGAAAAGCTTTATGAGAGCTACGA-GAGGCAGGGCAAGGGAAGGAAA 95100
Query 112257 ACGGTGCCAGCTGCCGATG-TGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTAC 112315
|| | ||| | || | | ||| || || ||| || |||||||||||||||||
Sbjct 95101 ACTATCAAAGC-CCAGAAGCTTTGGTTCGCCATCCTCGAGGCTCAAACCGAGACTGGTGT 95159
Query 112316 ACCATATATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGT 112375
|| || || ||||| || || ||| ||| || |||||| | | |||
Sbjct 95160 CCCTTACATCTGCTACAAGGATGCTGCCAACTCCAAGTCCAACCAAAAGCACCTTGGTAC 95219
Query 112376 GATCAA---GAGTTCCAACCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGAC 112432
||||| ||| ||||||||||| |||||| |||| | | | |||||
Sbjct 95220 CATCAAATCCAGT---AACCTCTGTACTGAAATCATGGAGTATTCTTCTCCTGATGAAGT 95276
Query 112433 GGCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAG-A 112491
||||| ||||| || || || | ||||| || | || || | || || |
Sbjct 95277 TGCTGTCTGTAATCTTGCTTCTCTTGCTCTTCCTGCCTTCGTAGACCTTGA-ACGTCGCG 95335
Query 112492 CATTTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACAAAAAACCTAAACAGAG 112551
| ||| | |||| || ||||| |||| || ||| ||||| ||||| ||| |
Sbjct 95336 TCTATGACTTCAAAAAGCTGCACGAGATTACCAAGGTTGTTACAAAGAACCTTGACACTG 95395
Query 112552 TTATTGATAGAAATTTTTACCCCGT---TGAGACTGCTCGTAAATCTAATATGAGACACC 112608
| || | || | || || || |||| || || || || || ||| | || |
Sbjct 95396 TAATCACCCGTAACTACTATCCAGTGCCTGAG---GCCCGCAACTCCAACATGCGCCATC 95452
Query 112609 GTCCAATTGGTCTCGGTGTCCAAGGTCTCGCGGATGTATTCATTCTTTGTCGCCACGCAT 112668
| || ||||||| |||||||| ||||| || || | ||||| |||| | |
Sbjct 95453 GACCTGTTGGTCTTGGTGTCCAGGGTCTTGCCGACGCTTTCATGGCCCTTCGCATGCCGT 95512
Query 112669 TTGATTCCGACGAAGCGAAGGAAATCAATGCGCGTATATTTGAGACAATGTATCACGCCG 112728
| || |||| || || | |||| ||||| | || || ||||| || || ||||| |
Sbjct 95513 TCGACTCCGCTGAGGCTAGGGAACTCAATATCCAGATCTTCGAGACGATATACCACGCGG 95572
Query 112729 CTCTTGAGGCG-AGTTCGGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGT 112787
| ||||||||| || || | || || |||| |||| | |||||| | | || |||
Sbjct 95573 CACTTGAGGCGTCGTGCGAACTT-GCCGAGGAGTTTGGTACCTATGAATCTTACGAAGGT 95631
Query 112788 TCTCCAGCTTCAC-AAGGG-GTGCTTCAATTTGATATGTGGG 112827
||||| | || | ||||| | ||||| | || |||||||
Sbjct 95632 TCTCC--CATCTCTAAGGGTATCCTTCAGTACGACATGTGGG 95671
>seq449
Length=79778
Score = 165 bits (182), Expect = 1e-35
Identities = 215/289 (74%), Gaps = 10/289 (3%)
Strand=Plus/Minus
Query 102048 CTCATAGACAAGTATATTAAGGATGGTGCTGAGAAGAAGCAGC-TCTTTGAAGCCATCCA 102106
||||| |||| || |||||||| |||| || ||| | | ||||||| || || |
Sbjct 63835 CTCATCGACACCTACATTAAGGACACTGCTC-GACGAAACTTCCTCTTTGACGCTATGGA 63777
Query 102107 AACAGTTCCATGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTT---TGATACAAA 102163
|| |||| ||||| | |||||| || || |||||| | ||| | ||| |||
Sbjct 63776 CACCATTCCTTGTATCCGAAAGAAGGCCGACTGGGCTCTTCGATGGATCTCTGACCAAAA 63717
Query 102164 GTCGCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTC 102223
|| ||| | || ||||||||| | || ||||| || |||||||||||||||||
Sbjct 63716 ATCTTGTTTCG--GC-GAGCGACTCATTGCTTTTGCTGCCGTGGAGGGTATCTTCTTCTC 63660
Query 102224 TGGTTCCTTCTGCG-CTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCT 102282
|||||| ||| ||| | || | ||||| |||||||||||||||||||| |||||| ||
Sbjct 63659 TGGTTCTTTC-GCGTCCATCTTCTGGCTTAAGAAGCGAGGTCTCATGCCTGGTCTCACCT 63601
Query 102283 TCTCCAACGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 102331
|||| |||||||| |||||||| |||||||| |||||| || |||||
Sbjct 63600 TCTCTAACGAGCTCATCTCTCGAGACGAGGGTCTCCACACCGACTTTGC 63552
>seq90
Length=80925
Score = 107 bits (118), Expect = 2e-18
Identities = 283/427 (66%), Gaps = 4/427 (1%)
Strand=Plus/Plus
Query 175840 ACCCGTACCGATACCCTCTGTACCGTTCACGAGAACCATGGGGAGTGTTGGCATGTAGAA 175899
||| ||||||||||| |||| ||| || | | ||||| || | || |||||| | |
Sbjct 70451 ACCAGTACCGATACCATCTGCACCATTGATCAATACCATTGGAACGGTGGGCATGAAATA 70510
Query 175900 GTCTGGCTCAATGGGGCGACCATCGTCATCCAAATAGTTGAGAATTGGATCATCTCTCGG 175959
||||| |||||| | |||||| || |||| |||||||| | |||||| ||
Sbjct 70511 ATCTGGTTCAATGCGCATACCATCCTCGACCAAGTAGTTGAGCAACCCGTCATCTGCAGG 70570
Query 175960 ATCAAAGATCTTTCG-GGCATCTTTTGTGAGCTTTGTAAAGATATACCTCGTTTGAGACG 176018
| ||||| ||| | |||| || || ||||| |||||||| | | || |
Sbjct 70571 GTGGAAGATTGCTCGAGTCATC-CGTGGAAGGTTTGTGAAGATATAACGAGCAGAAGCTG 70629
Query 176019 CATCCTTACCACCCATGAGACGCGTACCAAACTGACCACACGGCTCAAGAAGATTGATAT 176078
| || |||||||| ||||| |||||||| || || || || || |||||||| |
Sbjct 70630 CGTCTTTACCACCTGCAAGACGAGTACCAAATTGGCCGTTGGGATCCAGCAGATTGATGT 70689
Query 176079 TGTTTGAACCCATGTAGTCATTCGCCAACTTGACAATCGTGTCCGCGAGAGAGACTTCAC 176138
|||| || | | ||| | || || |||||| ||| | | | | ||||||
Sbjct 70690 TGTTACTGCCGACGAAGTTTTGTGCTAAACCGACAATGGTGGAAGTCAAACTGGCTTCAC 70749
Query 176139 CGTGGTGGTACGCACTCTTCTCTGCGACAAATGCCGCCAA-CTGCGCCACTTTCATCTCA 176197
| |||||||| || | ||||| | || | |||| ||| ||| || || || || ||
Sbjct 70750 CATGGTGGTATGCGGTTTTCTCCGAAACGTA-GCCGGCAAGCTGAGCGACCTTGATTTCT 70808
Query 176198 TCCTTGAGATTCTTGTGGAAACATGCGTACATAACCTTGCGTTGCGAAGGCTTGAGACCA 176257
| |||| || | |||||| | | | |||||| || || ||| ||||||||
Sbjct 70809 TTGGTGAGGTTTCGCTTGAAACAACCAAAGAGAACCTTTCGCTGACCAGGTTTGAGACCG 70868
Query 176258 TCCGCCA 176264
|| ||||
Sbjct 70869 TCGGCCA 70875
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 620737845302640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |