Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022221 55.1_202017-07-20] 587 sequences; 18,505,623 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq185 183 4e-41 seq90 104 3e-17 seq449 95.1 1e-14 >seq185 Length=108970 Score = 183 bits (202), Expect = 4e-41 Identities = 680/1053 (65%), Gaps = 37/1053 (4%) Strand=Plus/Minus Query 109988 CCTCGGCCAACTCGGATGAAGCCTCTAGTGCCGCATGATACATAGTCTCAAAAATATGAG 110047 ||||||| | ||| | || ||||| |||||||| || || || ||||| || || || Sbjct 95602 CCTCGGCAAGTTCGCACGACGCCTCAAGTGCCGCGTGGTATATCGTCTCGAAGATCTGGA 95543 Query 110048 CATTCATGAGGCGAGACTCTTCACAGTCGAAGGGAAGACCACAAAGAATAAACACATCCG 110107 ||| | | || ||| | ||||||| || | | | || || | || | Sbjct 95542 TATTGAGTTCCCTAGCCTCAGCGGAGTCGAACGGCATGCGAAGGGCCATGAAAGCGTCGG 95483 Query 110108 CTAGACCCTGAACACCGAGACCAATGGGGCGATGCTTCATGTTAGAGCGTCGAGCAGTTT 110167 | |||||||| ||||| ||||||| || ||||| |||||| ||| || || Sbjct 95482 CAAGACCCTGGACACCAAGACCAACAGGTCGATGGCGCATGTTGGAGTTGCGGGCCTCAG 95423 Query 110168 CTACGGGGTAAAAGTTGCGGTCGATGACCCGATTGAGATTCTTCGTCACAGTCTTCGTGA 110227 || || || |||| ||| ||| || | || ||||| || ||| ||| || | Sbjct 95422 GCACTGGATAGTAGTTACGGGTGATTACAGTGTCAAGGTTCTTTGTAACAACCTTGGTAA 95363 Query 110228 TTTCATGGAG---TTTGTCGTAATCGA----ACGTTTTCG-TCTCCTTATTGACATATTT 110279 | || || || |||| || || || ||||| | ||| | | | || Sbjct 95362 TCTCGTGCAGCTTTTTGAAGTCATAGACGCGACGTTCAAGGTCTACGAA--GGCA----- 95310 Query 110280 GGGGAGAGCAATAGACGCAAGATTGCACACAGAAGTCTCGTCTTTGTCGGTGTATTCCAA 110339 || ||||||| ||| |||||||| || |||| | || || | || |||| Sbjct 95309 -GGAAGAGCAAGAGAAGCAAGATTACAGACAGCAACTTCATCAGGAGAAGAATACTCCAT 95251 Query 110340 AATTTCCGTACACAAGTTGGAACTC---TTAATGACACCCAAGTTCTTCTGATTCGATTT 110396 ||||| ||||| | ||| ||| || ||| ||| | || ||| || || || || Sbjct 95250 GATTTCAGTACAGAGGTT---ACTGGATTTGATGGTACCAAGGTGCTTTTGGTTGGACTT 95194 Query 110397 GGAGTTGCATGCATCCTTATAGAGCATGTATGGGGTACCAGTTTCCGTCTGTGACTTGAG 110456 ||||||| |||||||| ||| ||||| ||| |||||| || || || | || ||| Sbjct 95193 GGAGTTGGCAGCATCCTTGTAGCAGATGTAAGGGACACCAGTCTCGGTTTGAGCCTCGAG 95134 Query 110457 AATGGCCTTCCATA-CATCGGCGGCGGGGACAGTTG-CGTTAGCGAGACCTTCCTCCTCG 110514 ||||| ||| | | || | ||| || |||| | || | | ||| |||| ||| Sbjct 95133 GATGGCGAACCAAAGCTTCTG-GGCTTTGATAGTTTTCCTTCCCTTGCCCTGCCTC-TCG 95076 Query 110515 TACTTGGTGTACAAGTCCTCAAATTCCTGTCCGTACACATCAGAAAGACCCTTCGCCTTG 110574 || | || | | |||||||| | ||||| || || | ||| || || | Sbjct 95075 TAGCTCTCATAAAGCTTTTCAAATTCTTCACCGTAAACGTCGGCAAGTCCAGGGCACTCG 95016 Query 110575 TCGGGACAGAAGAGGGACCAATTTCCACCCTCCTCAACCCTCTTCATGAACAGGTCAGGA 110634 ||||||| | || | ||||| ||| | || || | ||||||||| || || | Sbjct 95015 GCGGGACACATAAGAGTCCAATCCCCATCGGATTCGACACGCTTCATGAAAAGATCGGAG 94956 Query 110635 ATCCACATCGCCGAGAAAAGGTCACGGCAACGAGCCTCTTCATCACCTTGGTTGAGGCGT 110694 ||||| | || ||||||| ||||| || |||| || | ||| ||||| | | Sbjct 94955 ATCCAGAGGGCGTAGAAAAGATCACGAGCTCGTACCTCCTCCTTACCATGGTTCTTCCTT 94896 Query 110695 AGCTCCAAAAAGTCCATGATATCCGAGTGCCATGGTTCGAGATAGACAGCGATGGATCCC 110754 | || | ||||| | | ||| | |||||| || || ||||||| |||| || || Sbjct 94895 AAGTCAATGAAGTCAAATACATCAGCGTGCCAAGGCTCAAGATAGATGGCGAAGGCACC- 94837 Query 110755 TTACGACG------ACCCGCCTGGTTAACATAGCGTGCTGTGGCATTGAAGACCCTGAGC 110808 | |||| ||| | || | ||| || || |||||||| | | | | | |||| Sbjct 94836 --AGGACGCTTGTTACCACCTTGATCAACGTATCGAGCTGTGGCGTCGTAAGCTCGGAGC 94779 Query 110809 ATAGGAATAATTCCATCGGATTGACCATTTGTACCCCTAATTCTGGACTTATTGGCACGA 110868 |||||||| || || | ||| | |||||| ||||| ||| ||| || ||||| Sbjct 94778 ATAGGAATGATGCCGTTGGAGTAACCATTGGTACCGGCAATGTAGGAGCCCTTCGCACGG 94719 Query 110869 ATGTCGTGGATATGCATACCAATACCACCCGCCCACTTACTAATTTGTGCACAC-TCTGT 110927 || | ||| || || | |||||||||||| || ||| || || ||||| ||| | Sbjct 94718 ATATTGTGAATGTGAAGACCAATACCACCGGCAGTCTTGGAGATCTGAGCACAGGTCT-T 94660 Query 110928 GAGTGTACCATAAATACCATCAATCGAATCTGCCTTGTTGGCAATTAGAAAGCAAGAAGA 110987 ||| ||| | || ||||||||||| || || |||| |||| | || ||||| || || Sbjct 94659 GAGAGTATCGTAGATACCATCAATGGAGTCATCCTTCATGGCCACGAGGAAGCATGATGA 94600 Query 110988 CATCTGAGGACGAGGCGTTCCCGCATTGAAGAG 111020 ||| || || || || || || || ||||| || Sbjct 94599 CATTTGGGGTCGGGGAGTACCGGCGTTGAAAAG 94567 >seq90 Length=80925 Score = 104 bits (114), Expect = 3e-17 Identities = 287/433 (66%), Gaps = 14/433 (3%) Strand=Plus/Plus Query 167358 ACCCGTACCAATACCTTCAGTACCGTTTACCAAAACCATCGGTAGAGTTGGCATGTAAAA 167417 ||| ||||| ||||| || | ||| || | ||| ||||| || | || |||||| || | Sbjct 70451 ACCAGTACCGATACCATCTGCACCATTGATCAATACCATTGGAACGGTGGGCATGAAATA 70510 Query 167418 GTCGGGTTCAATGGAACGACCATCATCATCCAAGTAGTTGAGAATGGCATCATCTTTGGG 167477 || ||||||||| |||||| || ||||||||||||| | | |||||| || Sbjct 70511 ATCTGGTTCAATGCGCATACCATCCTCGACCAAGTAGTTGAGCAACCCGTCATCTGCAGG 70570 Query 167478 ATCGAAGAGCTTTCGAG-CCTCCTTGGTAAGCTTCGTAAAGATGTACCTCGTCTGAGACG 167536 | ||||| ||||| | ||| ||| ||| || || ||||| || | | || | Sbjct 70571 GTGGAAGATTGCTCGAGTCATCCGTGG-AAGGTTTGTGAAGATATAACGAGCAGAAGCTG 70629 Query 167537 CATCCTTGCCACCCATGAGGCGTGTACCAAATTGACCACATGGCTCGAGAAGATTGATGT 167596 | || || ||||| || || ||||||||||| || || || || |||||||||| Sbjct 70630 CGTCTTTACCACCTGCAAGACGAGTACCAAATTGGCCGTTGGGATCCAGCAGATTGATGT 70689 Query 167597 TATTCGAC-CCCGTATAATCGTTG-GCCAACTTGACGATCGTTTCAGCGAGGGAAA---- 167650 | || || ||| || ||| || || ||| || || | || ||| Sbjct 70690 TGTT--ACTGCCGACGAAGTTTTGTGCTAAACCGACAATGGT----GGAAGTCAAACTGG 70743 Query 167651 CTTCGCCGTGGTGGTAAGCACTCTTTTCAGCCACATATGCTGCCAACTGTGCAACCTTCA 167710 |||| || |||||||| || | || || | || || | || | ||| || ||||| | Sbjct 70744 CTTCACCATGGTGGTATGCGGTTTTCTCCGAAACGTAGCCGGCAAGCTGAGCGACCTTGA 70803 Query 167711 TCTCATCTTTGAGATTCTTTTGGAAACATGAATACATAACCTTGCGTTGAGAAGGTTTGA 167770 | || | |||| || | |||||| | | | |||||| || ||| |||||||| Sbjct 70804 TTTCTTTGGTGAGGTTTCGCTTGAAACAACCAAAGAGAACCTTTCGCTGACCAGGTTTGA 70863 Query 167771 GACCATCTGCCAC 167783 |||| || ||||| Sbjct 70864 GACCGTCGGCCAC 70876 >seq449 Length=79778 Score = 95.1 bits (104), Expect = 1e-14 Identities = 209/308 (68%), Gaps = 19/308 (6%) Strand=Plus/Plus Query 119495 GGCAAATTCTTGATGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCC 119554 |||||| || || || || || || |||||||||||||| ||| |||| || || Sbjct 63551 GGCAAAGTCGGTGTGGAGACCCTCGTCTCGAGAGATGAGCTCGTTAGAGAAGGTGAGACC 63610 Query 119555 AGGCATGAGTCCTCTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGAT 119614 ||||||||| |||| ||||| ||||| ||||||| ||| ||||| |||||||| Sbjct 63611 AGGCATGAGACCTCGCTTCTTAAGCCAGAAGATGGACGCGAAAGAACCAGAGAAGAAGAT 63670 Query 119615 GCCCTCCACACAGGCGAAAGCGAATAGACGCTCAGCAAAAGGTCGAGACTT---GTC--- 119668 |||||||| || ||||| | || ||||| | ||| | ||| || ||| Sbjct 63671 ACCCTCCACGGCAGCAAAAGCAATGAGTCGCTCGCCGAAA---CAAGATTTTTGGTCAGA 63727 Query 119669 GAACCACTTGAGAGCCCAGTTGGCCTTACGCTC-TATGCAGGGGACAGTTTGGATGGCTT 119727 || ||| |||||||||| |||||| | || || || || | || | || || | Sbjct 63728 GATCCATCGAAGAGCCCAGTCGGCCTT-CTTTCGGATACAAGGAATGGTGTCCATAGCGT 63786 Query 119728 CGAA----AAGTTGCTTCTTTTCAGCACCATCCTTAATATATTTATCAATGAGTTTAGAG 119783 | || ||||| | || |||| |||||||| || | || ||||| |||| Sbjct 63787 CAAAGAGGAAGTTTCGTC----GAGCAGTGTCCTTAATGTAGGTGTCGATGAGGAGAGAG 63842 Query 119784 TAGGTCTC 119791 |||||||| Sbjct 63843 TAGGTCTC 63850 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588971678388600