Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022221 55.1_202017-07-20] 587 sequences; 18,505,623 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq185 163 3e-35 seq90 125 8e-24 seq449 114 2e-20 >seq185 Length=108970 Score = 163 bits (180), Expect = 3e-35 Identities = 715/1122 (64%), Gaps = 37/1122 (3%) Strand=Plus/Minus Query 106095 CCCACATATCAAATTGAAGCACCCCTTGGGACGTGGGAGAACCCTCAAATGTCTCATAGG 106154 ||||||| || | ||||| | || | || |||||||||| || | | ||||||| Sbjct 95671 CCCACATGTCGTACTGAAGGATACCCTTAGAGATGGGAGAACCTTCGTAAGATTCATAGG 95612 Query 106155 AACCTTGGGCTTCAGCCAATTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAA 106214 ||| | || || | ||| || |||||| || | ||||| || || || || | Sbjct 95611 TACCAAACTCCTCGGCAAGTTCGCACGACGCCTCAAGTGCCGCGTGGTATATCGTCTCGA 95552 Query 106215 AGATACGAGCATTCATCTCCTTGGCTTCATCTGAATCAAA-----TGCGTAGCGGCACAA 106269 |||| | ||| | ||| | || ||| | || || || |||| || | || | Sbjct 95551 AGATCTGGATATTGAGTTCCCTAGCCTCAGCGGAGTCGAACGGCATGCGAAGGGCCATGA 95492 Query 106270 AATAAATACATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGA 106329 || | || || ||||| || ||||| | ||||| ||||| || ||||| || || Sbjct 95491 AAG-----CGTCGGCAAGACCCTGGACACCAAGACCAACAGGTCGATGGCGCATGTTGGA 95437 Query 106330 CTTTCGCGCAGTCTCA---ACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTT 106386 || || || |||| || ||||| | || | | || || || || || || Sbjct 95436 GTTGCGGGC---CTCAGGCACTGGATAGTAGTTACGGGTGATTACAGTGTCAAGGTTCTT 95380 Query 106387 GGTAACAATCTTTGTGATTTCATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATT 106446 ||||||| ||| || || || || || |||| | ||| | |||| || | Sbjct 95379 TGTAACAACCTTGGTAATCTCGTGCAGCTTTTTGAAGTCATAGACGCGACGTTCAAGGTC 95320 Query 106447 GACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGT 106506 || | ||||| || | || || | ||| || ||||| ||||| | | Sbjct 95319 TACGAAGGCAGGAAGAGCAAGAGAAGCAAGATTACAGACAGCAACTTCATCAGGAGAAGA 95260 Query 106507 GTACTCTAAAATTTCTGTACACAAGTTGGAACTC---TTAATCGTCCCCAAATTCTTTTG 106563 ||||| | ||||| ||||| | ||| ||| || || || || | | |||||| Sbjct 95259 ATACTCCATGATTTCAGTACAGAGGTT---ACTGGATTTGATGGTACCAAGGTGCTTTTG 95203 Query 106564 GTTACTCTTTTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTG 106623 ||| ||| |||| |||||||||||| ||||| || || ||||| || || Sbjct 95202 GTTGGACTTGGAGTTGGCAGCATCCTTGTAGCAGATGTAAGGGACACCAGTCTCGGTTTG 95143 Query 106624 TGACTTGAGAATTGCCTTCCACA-CATCGGCGGCTGGTACAATGG-CGTTGGCCCGT-CC 106680 | || ||| || || ||| | | || | |||| | | | | || ||| | || Sbjct 95142 AGCCTCGAGGATGGCGAACCAAAGCTTCTG-GGCTTTGATAGTTTTCCTT--CCCTTGCC 95086 Query 106681 CTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACC 106740 || | |||||| | || || |||||| || ||||| |||||| || || Sbjct 95085 CTGCCTCTCGTAGCTCTCATAAAGCTTTTCAAATTCTTCACCGTAAACGTCGGCAAGTCC 95026 Query 106741 TGGTGCCTTGTCTGGACAGAAAAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAA 106800 || || | | ||||| | ||||| ||| | ||| | || || ||||||||||| Sbjct 95025 AGGGCACTCGGCGGGACACATAAGAGTCCAATCCCCATCGGATTCGACACGCTTCATGAA 94966 Query 106801 AAGGTCTGGAATCCACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTG 106860 ||| || | ||||| |||| | || ||||| | | || |||| || | ||| || Sbjct 94965 AAGATCGGAGATCCAGAGGGCGTAGAAAAGATCACGAGCTCGTACCTCCTCCTTACCATG 94906 Query 106861 GTTGAGTCGTAACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGC 106920 ||| | ||| |||| ||| || | | ||| |||||||| ||||||||||||| || Sbjct 94905 GTTCTTCCTTAAGTCAATGAAGTCAAATACATCAGCGTGCCAAGGCTCAAGATAGATGGC 94846 Query 106921 GATAGATCCCTTTCGACGC------CCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAA 106974 || | || ||||| ||| |||||| || || || |||||||||| | Sbjct 94845 GAAGGCACC---AGGACGCTTGTTACCACCTTGATCAACGTATCGAGCTGTGGCGTCGTA 94789 Query 106975 TACGCGAAGCATTGGAATAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGATTT 107034 | || ||||| ||||| || || | || | |||||| || || ||| || Sbjct 94788 AGCTCGGAGCATAGGAATGATGCCGTTGGAGTAACCATTGGTACCGGCAATGTAGGAGCC 94729 Query 107035 ATTGGCTCTCACATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGC 107094 || || | | || || ||||| | |||||||| || || ||| ||||| || || Sbjct 94728 CTTCGCACGGATATTGTGAATGTGAAGACCAATACCACCGGCAGTCTTGGAGATCTGAGC 94669 Query 107095 ACACTCCGTAAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAA 107154 ||| | | ||||| | |||||||| | || ||||| ||||| |||| | ||||| Sbjct 94668 ACAGGTCTTGAGAGTATCGTAGATACCATCAATGGAGTCATCCTTCATGGCCACGAGGAA 94609 Query 107155 GCAACTGGACATCTGCGGTCTTGGTGTACCAGCATTGAAGAG 107196 ||| ||||| || |||| || ||||| || ||||| || Sbjct 94608 GCATGATGACATTTGGGGTCGGGGAGTACCGGCGTTGAAAAG 94567 >seq90 Length=80925 Score = 125 bits (138), Expect = 8e-24 Identities = 287/428 (67%), Gaps = 8/428 (2%) Strand=Plus/Plus Query 168291 CCCGTACCGATACCTTCGGTTCCATTCACGAGAACCATTGGTATGGTTGGCATGTAAAAG 168350 || ||||||||||| || | ||||| | | |||||||| | ||| |||||| || | Sbjct 70452 CCAGTACCGATACCATCTGCACCATTGATCAATACCATTGGAACGGTGGGCATGAAATAA 70511 Query 168351 TCTGGTTCAATTGAGCGC---CCATCATCATCCAAGTAGTTGAGGATCGGGTCATCCCGA 168407 ||||||||||| |||| ||||| || ||||||||||||| | | |||||| | Sbjct 70512 TCTGGTTCAAT---GCGCATACCATCCTCGACCAAGTAGTTGAGCAACCCGTCATCTGCA 70568 Query 168408 GGATCAAAGATCTTGCGAG-CCTCTTTGGTAAGTTTTGTGAAAATGTACCTCGTCTGAGA 168466 || | ||||| |||| | || ||| ||| |||||||| || || | | || Sbjct 70569 GGGTGGAAGATTGCTCGAGTCATCCGTGG-AAGGTTTGTGAAGATATAACGAGCAGAAGC 70627 Query 168467 AGCATCCTTACCACCCATGAGACGCGTACCAAATTGACCACACGGTTCAAGAAGGTTAAT 168526 || || |||||||| ||||| ||||||||||| || || || || || || || Sbjct 70628 TGCGTCTTTACCACCTGCAAGACGAGTACCAAATTGGCCGTTGGGATCCAGCAGATTGAT 70687 Query 168527 GTTGTTTGAACCCGTGTAGTCGTTTGCCAACTTAACAATCGTGTCCGCTAAGGATACTTC 168586 |||||| || | ||| | ||| || ||||| ||| | || |||| Sbjct 70688 GTTGTTACTGCCGACGAAGTTTTGTGCTAAACCGACAATGGTGGAAGTCAAACTGGCTTC 70747 Query 168587 ACCATGGTGGTACGCAGACTTGTCCGCGACATATGCCGCCAGTTGTGCCACCTTCATTTC 168646 |||||||||||| || | || |||| || || | || || || || ||||| ||||| Sbjct 70748 ACCATGGTGGTATGCGGTTTTCTCCGAAACGTAGCCGGCAAGCTGAGCGACCTTGATTTC 70807 Query 168647 ATCCTTGAGATTCTTATGGAAGCAAGCATACATCACTTTCCTCTGTGAAGGCTTGAGACC 168706 | |||| || | ||| ||| || | | || || | ||| ||| |||||||| Sbjct 70808 TTTGGTGAGGTTTCGCTTGAAACAACCAAAGAGAACCTTTCGCTGACCAGGTTTGAGACC 70867 Query 168707 ATCCGCCA 168714 || |||| Sbjct 70868 GTCGGCCA 70875 >seq449 Length=79778 Score = 114 bits (126), Expect = 2e-20 Identities = 123/160 (77%), Gaps = 2/160 (1%) Strand=Plus/Plus Query 117273 GGCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCC 117332 |||||| || |||||||||||| ||||| || || || || || |||||| || || Sbjct 63551 GGCAAAGTCGGTGTGGAGACCCTCGTCTCGAGAGATGAGCTCGTTAGAGAAGGTGAGACC 63610 Query 117333 TGGCATGAGACCCCGCTTCTTCAACCAATAAATAG-CGCAGAATGACCCGGAGAAGAAGA 117391 ||||||||||| |||||||| | ||| | || | ||| ||| || || |||||||||| Sbjct 63611 AGGCATGAGACCTCGCTTCTTAAGCCAGAAGATGGACGC-GAAAGAACCAGAGAAGAAGA 63669 Query 117392 TACCCTCCACACACGCAAACGCAAAAAGGCGCTCGGCGAA 117431 |||||||||| ||||| |||| || |||||| |||| Sbjct 63670 TACCCTCCACGGCAGCAAAAGCAATGAGTCGCTCGCCGAA 63709 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589976471015880