Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022221
55.1_202017-07-20] 587 sequences; 18,505,623 total letters
Query= NC_015398.1
Length=101487
Score E
Sequences producing significant alignments: (Bits) Value
seq449 95.1 8e-15
>seq449
Length=79778
Score = 95.1 bits (104), Expect = 8e-15
Identities = 136/192 (71%), Gaps = 0/192 (0%)
Strand=Plus/Minus
Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850
|| || || ||||| ||||| ||||| | || |||| ||||| ||||| || |||||
Sbjct 78464 TCCTTTTGGATGTTGTAGTCGGAAAGAGTACGACCATCCTCCAGTTGTTTACCAGCAAAA 78405
Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910
|| | ||||||||| || | || | || |||||||| ||||||| || |||
Sbjct 78404 ATCAATCGTTGCTGATCAGGAGGAATACCTTCCTTGTCCTGAATCTTCGCCTTAACGTTG 78345
Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970
| || | ||| | ||| || || | || || || ||||| || | |||||| |||
Sbjct 78344 TCGATAGTGTCAGACGACTCGACTTCAAGAGTGATAGTCTTTCCGGTCAAAGTCTTGACA 78285
Query 34971 AAGATCTGCATA 34982
||||||||||||
Sbjct 78284 AAGATCTGCATA 78273
Score = 86.0 bits (94), Expect = 4e-12
Identities = 138/196 (70%), Gaps = 8/196 (4%)
Strand=Plus/Minus
Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850
|| || || || || || || ||||| |||| |||| || || ||||||||||| ||
Sbjct 77957 TCCTTTTGGATATTGTAATCGGAAAGAGTTCGGCCATCTTCAAGTTGTTTTCCGGCGAAG 77898
Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910
|| ||||||||||| || | || | ||||||||||| ||||| ||||| ||
Sbjct 77897 ATGAGTCGTTGCTGATCAGGGGGGATACCCTCCTTGTCTTGGATCTTGGCCTTGAC--AT 77840
Query 34911 GCTATCGAT----TCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTT 34966
| ||||| ||| | || || || | ||| |||||||| || ||||| || ||
Sbjct 77839 --TGTCGATGGTATCAGAGCTTTCGACTTCAAGGGTAATGGTTTTGCCGGTGAGGGTTTT 77782
Query 34967 CACAAAGATCTGCATA 34982
|| ||||| ||||||
Sbjct 77781 GACGAAGATTTGCATA 77766
Score = 84.2 bits (92), Expect = 1e-11
Identities = 117/164 (71%), Gaps = 0/164 (0%)
Strand=Plus/Minus
Query 34819 TTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCC 34878
|||| |||| ||||| || |||||||| || || | |||||| ||||| | || | |
Sbjct 78157 TTCGACCATCTTCCAGTTGCTTTCCGGCGAAGATCAATCGTTGTTGGTCAGGAGGGATAC 78098
Query 34879 CCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGA 34938
|||||||||| ||||||| ||||| | || | ||| || ||||| || |
Sbjct 78097 CCTCCTTGTCCTGAATCTTCGCCTTGACATTGTCAATGGTGTCAGAGGATTCAACCTCAA 78038
Query 34939 CGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982
|| || || ||||| || |||||||| || || |||||||||
Sbjct 78037 GAGTGATAGTCTTTCCGGTAAGAGTCTTGACGAAAATCTGCATA 77994
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 324631277550936
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |