Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022221 55.1_202017-07-20] 587 sequences; 18,505,623 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq449 95.1 8e-15 >seq449 Length=79778 Score = 95.1 bits (104), Expect = 8e-15 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || || || ||||| ||||| ||||| | || |||| ||||| ||||| || ||||| Sbjct 78464 TCCTTTTGGATGTTGTAGTCGGAAAGAGTACGACCATCCTCCAGTTGTTTACCAGCAAAA 78405 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || | ||||||||| || | || | || |||||||| ||||||| || ||| Sbjct 78404 ATCAATCGTTGCTGATCAGGAGGAATACCTTCCTTGTCCTGAATCTTCGCCTTAACGTTG 78345 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | ||| | ||| || || | || || || ||||| || | |||||| ||| Sbjct 78344 TCGATAGTGTCAGACGACTCGACTTCAAGAGTGATAGTCTTTCCGGTCAAAGTCTTGACA 78285 Query 34971 AAGATCTGCATA 34982 |||||||||||| Sbjct 78284 AAGATCTGCATA 78273 Score = 86.0 bits (94), Expect = 4e-12 Identities = 138/196 (70%), Gaps = 8/196 (4%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || || || || || || || ||||| |||| |||| || || ||||||||||| || Sbjct 77957 TCCTTTTGGATATTGTAATCGGAAAGAGTTCGGCCATCTTCAAGTTGTTTTCCGGCGAAG 77898 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || ||||||||||| || | || | ||||||||||| ||||| ||||| || Sbjct 77897 ATGAGTCGTTGCTGATCAGGGGGGATACCCTCCTTGTCTTGGATCTTGGCCTTGAC--AT 77840 Query 34911 GCTATCGAT----TCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTT 34966 | ||||| ||| | || || || | ||| |||||||| || ||||| || || Sbjct 77839 --TGTCGATGGTATCAGAGCTTTCGACTTCAAGGGTAATGGTTTTGCCGGTGAGGGTTTT 77782 Query 34967 CACAAAGATCTGCATA 34982 || ||||| |||||| Sbjct 77781 GACGAAGATTTGCATA 77766 Score = 84.2 bits (92), Expect = 1e-11 Identities = 117/164 (71%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 34819 TTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCC 34878 |||| |||| ||||| || |||||||| || || | |||||| ||||| | || | | Sbjct 78157 TTCGACCATCTTCCAGTTGCTTTCCGGCGAAGATCAATCGTTGTTGGTCAGGAGGGATAC 78098 Query 34879 CCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGA 34938 |||||||||| ||||||| ||||| | || | ||| || ||||| || | Sbjct 78097 CCTCCTTGTCCTGAATCTTCGCCTTGACATTGTCAATGGTGTCAGAGGATTCAACCTCAA 78038 Query 34939 CGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 || || || ||||| || |||||||| || || ||||||||| Sbjct 78037 GAGTGATAGTCTTTCCGGTAAGAGTCTTGACGAAAATCTGCATA 77994 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324631277550936