Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022221 55.1_202017-07-20] 587 sequences; 18,505,623 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq449 123 2e-22 seq407 109 4e-18 seq187 96.9 3e-14 seq68 87.8 1e-11 >seq449 Length=79778 Score = 123 bits (136), Expect = 2e-22 Identities = 164/223 (74%), Gaps = 6/223 (3%) Strand=Plus/Minus Query 563256 GAGACGGAGTACAAGATGAAGGGTACTTTC--TTTGGTAATATTGTAATCAGCTAGAGTT 563313 |||||| | || ||||| |||||| || ||||| ||||||||||| | |||||| Sbjct 77985 GAGACGCAAGACGAGATGGAGGGTAGACTCCTTTTGG--ATATTGTAATCGGAAAGAGTT 77928 Query 563314 CTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCT 563373 | ||||||||||||||||||||| || || |||| |||||||||||| || || || Sbjct 77927 CGGCCATCTTCAAGTTGTTTTCCGGCGAAGATGAGTCGTTGCTGATCAGGGGGGATACCC 77868 Query 563374 TCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTG-TGAGTACATTCGAG 563432 || || ||||| || || || || || || ||||||| | | || ||| || Sbjct 77867 TCCTTGTCTTGGATCTTGGCCTTGACATTGTCGATGGTATCAGAGCTTTCGAC-TTCAAG 77809 Query 563433 AGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCATA 563475 |||| ||||| || || || ||||| ||||| ||||||||| Sbjct 77808 GGTAATGGTTTTGCCGGTGAGGGTTTTGACGAAGATTTGCATA 77766 Score = 104 bits (114), Expect = 2e-16 Identities = 159/222 (72%), Gaps = 6/222 (3%) Strand=Plus/Minus Query 563257 AGACGGAGTACAAGATGAAGGGTACTTTC--TTTGGTAATATTGTAATCAGCTAGAGTTC 563314 |||||||| ||||| ||||||||| || ||||| || ||||| || | ||||| | Sbjct 78491 AGACGGAGAACAAGGTGAAGGGTAGACTCCTTTTGG--ATGTTGTAGTCGGAAAGAGTAC 78434 Query 563315 TTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTT 563374 ||| || |||||||| || |||||||| | || |||||||||||||||||| |||| Sbjct 78433 GACCATCCTCCAGTTGTTTACCAGCAAAAATCAATCGTTGCTGATCAGGAGGAATACCTT 78374 Query 563375 CTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTCGAGA 563433 | || || ||||| || || || || || || |||| || | | ||| ||| Sbjct 78373 CCTTGTCCTGAATCTTCGCCTTAACGTTGTCGATAGTGTCAG-ACGACTCGACTTCAAGA 78315 Query 563434 GTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCATA 563475 || | ||| || || || | ||| || || || || |||||| Sbjct 78314 GTGATAGTCTTTCCGGTCAAAGTCTTGACAAAGATCTGCATA 78273 Score = 102 bits (112), Expect = 7e-16 Identities = 106/137 (77%), Gaps = 4/137 (3%) Strand=Plus/Minus Query 563256 GAGACGGAGTACAAGATGAAGGGTACTTTC--TTTGGTAATATTGTAATCAGCTAGAGTT 563313 |||||| | || ||||| |||||| || ||||| ||||||||||| | |||||| Sbjct 78773 GAGACGCAAGACGAGATGGAGGGTAGACTCCTTTTGG--ATATTGTAATCGGAAAGAGTT 78716 Query 563314 CTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCT 563373 | ||||||||||||||||||||| || || |||| |||||||||||| || || || Sbjct 78715 CGGCCATCTTCAAGTTGTTTTCCGGCGAAGATGAGTCGTTGCTGATCAGGGGGGATACCC 78656 Query 563374 TCTTTATCTTGAATTTT 563390 || || ||||| || || Sbjct 78655 TCCTTGTCTTGGATCTT 78639 Score = 87.8 bits (96), Expect = 1e-11 Identities = 130/182 (71%), Gaps = 2/182 (1%) Strand=Plus/Minus Query 563294 TATTGTAATCAGCTAGAGTTCTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTT 563353 || |||| || | ||||| || ||||||||| || || || ||||| || | || || Sbjct 77668 TACTGTAGTCGGAGAGAGTCCTGCCATCTTCAAGCTGCTTACCAGCAAAGATCAATCGTT 77609 Query 563354 GCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTAT 563413 |||| |||||||| || || || || ||||| || || || || || || || | Sbjct 77608 GCTGGTCAGGAGGGATACCCTCCTTGTCTTGGATCTTGGCCTTGACATTGTCGATGGTGT 77549 Query 563414 CAGTGTGAGTACA-TTCGAGAGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGC 563472 | | || | || ||| ||||| | ||| ||||| || ||||| || |||||||||||| Sbjct 77548 CGGAA-GACTCCACTTCAAGAGTGATAGTCTTACCGGTGAGAGTCTTGACGAAAATTTGC 77490 Query 563473 AT 563474 || Sbjct 77489 AT 77488 >seq407 Length=11167 Score = 109 bits (120), Expect = 4e-18 Identities = 142/192 (74%), Gaps = 6/192 (3%) Strand=Plus/Minus Query 550064 GCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACGGAAACTGAAC-A 550122 ||||| ||||| || || |||| || ||||| |||||| |||||| || |||||| | Sbjct 779 GCCAACGATCAGGGCAATCGAACAACACCATCATATGTTGCTTTCAATGACTCTGAACGA 720 Query 550123 TTTAGTTGGTGATGCAGCAAAATATCAAGC--CACTGGTAATCCTACCAATACTATTTTT 550180 ||| | |||||||| || || | |||| || || |||||| ||| ||| |||| Sbjct 719 CTTA-TCGGTGATGCCGCGAAGAACCAAGTTGCAATG--AATCCTTACAACACTGTTTTC 663 Query 550181 GATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGCAGATATGAAG 550240 |||||||| || || || || | | ||||| ||| | |||||||| || |||||| Sbjct 662 GATGCTAAGCGGTTGATCGGCCGTAAGTTTAACGATGCCGAAGTTCAGGCCGACATGAAG 603 Query 550241 CATTGGCCTTTC 550252 |||||||||||| Sbjct 602 CATTGGCCTTTC 591 >seq187 Length=48755 Score = 96.9 bits (106), Expect = 3e-14 Identities = 106/141 (75%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 390855 ATTTCTTACGGTACCATCATACTCTACTTTAATGTCTTCTAACATTTTAACTAATTTTCT 390914 |||||| || ||||||||||| | || || | ||| || | | ||| || ||| |||| Sbjct 35874 ATTTCTCACAGTACCATCATAAGCAACCTTCAAGTCCTCCATCGCTTTGACCAATCTTCT 35815 Query 390915 TTGGATATAACCAGTGTCTGCAGTTTTAATTGCAGTATTAATAATACCTTCTCTTCCTGC 390974 ||||||||||||||| || ||||| || | || |||| ||| | |||||||| || | Sbjct 35814 TTGGATATAACCAGTCTCAGCAGTCTTGACAGCGGTATCAATCAAACCTTCTCGACCACC 35755 Query 390975 CATAACTTGGAAGAAAAATTC 390995 |||| | ||||| | ||||| Sbjct 35754 CATAGCGTGGAACCAGAATTC 35734 >seq68 Length=33655 Score = 87.8 bits (96), Expect = 1e-11 Identities = 130/184 (71%), Gaps = 3/184 (2%) Strand=Plus/Plus Query 550403 GTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGA 550462 |||| || || || || || || || ||||| || |||| || ||||| || || || Sbjct 14785 GTAAAAAGCGTTCCTGCCTACTTCAACGACTCTCAGCGTCTCGCCACTAAGGACGCCGGT 14844 Query 550463 CGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCA 550522 ||||| || ||| | || || ||||||||||| |||||||||||||| || |||| Sbjct 14845 GCCATTGCCGGTCTTGAGGTGCTCCGTATTATCAACGAACCTACTGCTGCCGCTATTGCC 14904 Query 550523 TATGGACTTGATAAACATAATGATCAAGAACTTAATGTACTCATCTTTGATT---GTGGA 550579 || || ||||| | | | ||| | || | || || |||||||| || | |||| Sbjct 14905 TACGGTCTTGACGAGAAGACTGAGGAGGAGCGAAACGTCCTCATCTTCGACTTGGGTGGT 14964 Query 550580 GGTA 550583 |||| Sbjct 14965 GGTA 14968 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4029264956792630