Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022221
55.1_202017-07-20] 587 sequences; 18,505,623 total letters
Query= NC_018504.1
Length=123876
Score E
Sequences producing significant alignments: (Bits) Value
seq449 150 1e-31
>seq449
Length=79778
Score = 150 bits (166), Expect = 1e-31
Identities = 163/216 (75%), Gaps = 0/216 (0%)
Strand=Plus/Minus
Query 101254 ACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGC 101313
||| | ||| | ||||||||||| || ||||| || ||||| |||| | ||| | |
Sbjct 78489 ACGGAGAACAAGGTGAAGGGTAGACTCCTTTTGGATGTTGTAGTCGGAAAGAGTACGACC 78430
Query 101314 ATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTT 101373
||| |||| ||| ||||| ||||| ||||| || || ||||| || ||||| ||||| ||
Sbjct 78429 ATCCTCCAGTTGTTTACCAGCAAAAATCAATCGTTGCTGATCAGGAGGAATACCTTCCTT 78370
Query 101374 ATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGAC 101433
|| ||||| || || || | || | ||||||||||| || |||||||||||||
Sbjct 78369 GTCCTGAATCTTCGCCTTAACGTTGTCGATAGTGTCAGACGACTCGACTTCAAGAGTGAT 78310
Query 101434 CGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469
|| || ||||| ||||| || ||||| ||||||||
Sbjct 78309 AGTCTTTCCGGTCAAAGTCTTGACAAAGATCTGCAT 78274
Score = 122 bits (134), Expect = 7e-23
Identities = 163/227 (72%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302
|| |||| | ||| || || | ||| |||||||| || ||||| |||||||||||||
Sbjct 77993 CCACCTCGGAGACGCAAGACGAGATGGAGGGTAGACTCCTTTTGGATATTGTAATCGGAA 77934
Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362
| ||||| | |||| || | ||| || || || || || | || || ||||| || ||
Sbjct 77933 AGAGTTCGGCCATCTTCAAGTTGTTTTCCGGCGAAGATGAGTCGTTGCTGATCAGGGGGG 77874
Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422
|| || || || ||||| || || || ||| | || | || ||||| |||| |||
Sbjct 77873 ATACCCTCCTTGTCTTGGATCTTGGCCTTGACATTGTCGATGGTATCAGAGCTTTCGACT 77814
Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469
||||| || | ||||||||||| | ||||| || || || |||||
Sbjct 77813 TCAAGGGTAATGGTTTTGCCGGTGAGGGTTTTGACGAAGATTTGCAT 77767
Score = 107 bits (118), Expect = 2e-18
Identities = 134/184 (73%), Gaps = 0/184 (0%)
Strand=Plus/Minus
Query 101289 TATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCT 101348
|| |||| |||| || ||| ||| |||| || | |||||||| ||||| ||||| || |
Sbjct 77668 TACTGTAGTCGGAGAGAGTCCTGCCATCTTCAAGCTGCTTACCAGCAAAGATCAATCGTT 77609
Query 101349 GTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGT 101408
| || || || || || || || || ||||| || || || ||| | || | ||||
Sbjct 77608 GCTGGTCAGGAGGGATACCCTCCTTGTCTTGGATCTTGGCCTTGACATTGTCGATGGTGT 77549
Query 101409 CAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCA 101468
| || | |||||||||||||||| || || ||||| | ||| || || || || ||||
Sbjct 77548 CGGAAGACTCCACTTCAAGAGTGATAGTCTTACCGGTGAGAGTCTTGACGAAAATTTGCA 77489
Query 101469 TGGT 101472
||||
Sbjct 77488 TGGT 77485
Score = 91.5 bits (100), Expect = 1e-13
Identities = 142/203 (70%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302
|| |||| | ||| || || | ||| |||||||| || ||||| |||||||||||||
Sbjct 78781 CCACCTCGGAGACGCAAGACGAGATGGAGGGTAGACTCCTTTTGGATATTGTAATCGGAA 78722
Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362
| ||||| | |||| || | ||| || || || || || | || || ||||| || ||
Sbjct 78721 AGAGTTCGGCCATCTTCAAGTTGTTTTCCGGCGAAGATGAGTCGTTGCTGATCAGGGGGG 78662
Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422
|| || || || ||||| || || || || | || | || || || ||| |||
Sbjct 78661 ATACCCTCCTTGTCTTGGATCTTGGCCTTGACGTTGTCGATGGTATCGCTCGATTCGACT 78602
Query 101423 TCAAGAGTGACCGTTTTGCCGGT 101445
|||||||||| || || || ||
Sbjct 78601 TCAAGAGTGATTGTCTTACCCGT 78579
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 396275564999559
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |