Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022221 55.1_202017-07-20] 587 sequences; 18,505,623 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq449 132 3e-25 seq407 125 5e-23 seq187 87.8 1e-11 >seq449 Length=79778 Score = 132 bits (146), Expect = 3e-25 Identities = 160/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 480552 CGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTT 480611 || ||||| | || ||||| || ||| || || | ||| ||||| | |||||| Sbjct 77987 CGGAGACGCAAGACGAGATGGAGGGTAGACTCCTTTTGGATATTGTAATCGGAAAGAGTT 77928 Query 480612 CTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCT 480671 | | |||||||||||| ||||| || || || || ||||| |||||||| || || || Sbjct 77927 CGGCCATCTTCAAGTTGTTTTCCGGCGAAGATGAGTCGTTGCTGATCAGGGGGGATACCC 77868 Query 480672 TCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGG 480731 ||||||||||| ||||| |||||| || || ||||||| | | ||||||| Sbjct 77867 TCCTTGTCTTGGATCTTGGCCTTGACATTGTCGATGGTATCAGAGCTTTCGACTTCAAGG 77808 Query 480732 GTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 ||||| ||||| |||||||| || || ||||| ||||| Sbjct 77807 GTAATGGTTTTGCCGGTGAGGGTTTTGACGAAGATTTG 77770 Score = 120 bits (132), Expect = 2e-21 Identities = 127/165 (77%), Gaps = 2/165 (1%) Strand=Plus/Minus Query 480606 AGAGTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGA 480665 ||||| ||| ||||||||| ||||| |||||||| || | ||||| || |||||||| Sbjct 77654 AGAGTCCTGCCATCTTCAAGCTGCTTACCAGCAAAGATCAATCGTTGCTGGTCAGGAGGG 77595 Query 480666 ATTCCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGT 480724 || || ||||||||||| ||||| |||||| || || || || | | | | Sbjct 77594 ATACCCTCCTTGTCTTGGATCTTGGCCTTGACATTGTCGATGGTGTCGGAAGACTCCA-C 77536 Query 480725 TTCAAGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 |||||| || ||||| ||||||||||||||||| ||||||||||| Sbjct 77535 TTCAAGAGTGATAGTCTTACCGGTGAGAGTCTTGACGAAAATTTG 77491 Score = 118 bits (130), Expect = 7e-21 Identities = 130/173 (75%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 480597 TAATCAGCTAGAGTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGA 480656 ||||||| | ||||| |||||| ||||||||||| || || || | |||||||| Sbjct 78170 TAATCAGACAAAGTTCGACCATCTTCCAGTTGCTTTCCGGCGAAGATCAATCGTTGTTGG 78111 Query 480657 TCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTG 480716 |||||||| || || |||||||| |||||||| |||||| ||||| || |||| | Sbjct 78110 TCAGGAGGGATACCCTCCTTGTCCTGAATCTTCGCCTTGACATTGTCAATGGTGTCAGAG 78051 Query 480717 TGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 | | ||||| || ||||| || ||||| |||||||| |||||||| || Sbjct 78050 GATTCAACCTCAAGAGTGATAGTCTTTCCGGTAAGAGTCTTGACGAAAATCTG 77998 Score = 105 bits (116), Expect = 4e-17 Identities = 157/220 (71%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 ||| |||||||| ||||| ||||| ||| || || | || || || | ||||| Sbjct 78495 ACGCAGACGGAGAACAAGGTGAAGGGTAGACTCCTTTTGGATGTTGTAGTCGGAAAGAGT 78436 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 | ||| || ||||| || ||||||||||| | ||||| |||||||||||||| || Sbjct 78435 ACGACCATCCTCCAGTTGTTTACCAGCAAAAATCAATCGTTGCTGATCAGGAGGAATACC 78376 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAA 480729 ||||||||| |||||||| || || || ||||| |||| | | | ||||| Sbjct 78375 TTCCTTGTCCTGAATCTTCGCCTTAACGTTGTCGATAGTGTCAGACGACTCGA-CTTCAA 78317 Query 480730 GGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 | || ||||| || ||||| | |||||| || || || || Sbjct 78316 GAGTGATAGTCTTTCCGGTCAAAGTCTTGACAAAGATCTG 78277 Score = 89.7 bits (98), Expect = 3e-12 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 480552 CGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTT 480611 || ||||| | || ||||| || ||| || || | ||| ||||| | |||||| Sbjct 78775 CGGAGACGCAAGACGAGATGGAGGGTAGACTCCTTTTGGATATTGTAATCGGAAAGAGTT 78716 Query 480612 CTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCT 480671 | | |||||||||||| ||||| || || || || ||||| |||||||| || || || Sbjct 78715 CGGCCATCTTCAAGTTGTTTTCCGGCGAAGATGAGTCGTTGCTGATCAGGGGGGATACCC 78656 Query 480672 TCCTTGTCTTGAATCTT 480688 ||||||||||| ||||| Sbjct 78655 TCCTTGTCTTGGATCTT 78639 >seq407 Length=11167 Score = 125 bits (138), Expect = 5e-23 Identities = 146/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 474401 GCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACTGAAACTGAACAT 474460 ||||| || || || ||| |||||||||||||||||||| |||| | ||| |||||| Sbjct 779 GCCAACGATCAGGGCAATCGAACAACACCATCATATGTTGCTTTCAATGACTCTGAACGA 720 Query 474461 CTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAATACTATTTTTGAT 474520 ||||| || ||||| || || | |||| |||| |||||| || ||| |||| ||| Sbjct 719 CTTATCGGTGATGCCGCGAAGAACCAAGTTGCAATGAATCCTTACAACACTGTTTTCGAT 660 Query 474521 GCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAATCTGATATGCGTCAT 474580 ||||| | ||||| || ||||| ||| | ||| || || || | || ||| ||| Sbjct 659 GCTAAGCGGTTGATCGGCCGTAAGTTTAACGATGCCGAAGTTCAGGCCGACATGAAGCAT 600 Query 474581 TGGCCTTTTAAGGTGAT 474597 |||||||| ||||| || Sbjct 599 TGGCCTTTCAAGGTAAT 583 >seq187 Length=48755 Score = 87.8 bits (96), Expect = 1e-11 Identities = 104/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 318687 ATTTCTTACAGTACCATCATATTCCACTTTAATATCTTCTAGTATTTTAACTAATTTTCT 318746 |||||| |||||||||||||| | || || | || || | ||| || ||| |||| Sbjct 35874 ATTTCTCACAGTACCATCATAAGCAACCTTCAAGTCCTCCATCGCTTTGACCAATCTTCT 35815 Query 318747 TTGTACATAACCTGTGTCTGCAGTTTTAATAGCAGTATTAATAATACCTTCTCTTCCTGC 318806 ||| | |||||| || || ||||| || | ||| |||| ||| | |||||||| || | Sbjct 35814 TTGGATATAACCAGTCTCAGCAGTCTTGACAGCGGTATCAATCAAACCTTCTCGACCACC 35755 Query 318807 CATAACTTGGAAAAAGAATTC 318827 |||| | ||||| ||||||| Sbjct 35754 CATAGCGTGGAACCAGAATTC 35734 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3268154020721876