Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022221
55.1_202017-07-20] 587 sequences; 18,505,623 total letters
Query= NC_021312.1
Length=459984
Score E
Sequences producing significant alignments: (Bits) Value
seq90 122 3e-22
seq185 107 6e-18
seq449 102 2e-16
seq187 95.1 4e-14
>seq90
Length=80925
Score = 122 bits (134), Expect = 3e-22
Identities = 261/384 (68%), Gaps = 12/384 (3%)
Strand=Plus/Plus
Query 59989 ACCAGTACCAATACCCTTTGTTCCATTGATAAGAATCATCGGGATAATTGGGATATAATA 60048
||||||||| ||||| | || |||||||| | | ||| || | | || || ||||
Sbjct 70451 ACCAGTACCGATACCATCTGCACCATTGATCAATACCATTGGAACGGTGGGCATGAAATA 70510
Query 60049 AACTGGCTCAACACTATCACCATCATCTTTTAAGTATGTTAA--AACCTTGTCGTCAATT 60106
| |||| |||| | |||||| || ||||| ||| | |||| ||||| |
Sbjct 70511 ATCTGGTTCAATGCGCATACCATCCTCGACCAAGTA-GTTGAGCAACC----CGTCATCT 70565
Query 60107 TCGGGA---AATATAGCCCGAGTAATCT-TGGATAATTGTGTGAAAATATACCTCTCGGA 60162
| || || || || ||||| ||| |||| || |||||| ||||| | | ||
Sbjct 70566 GCAGGGTGGAAGATTGCTCGAGTCATCCGTGGAAGGTT-TGTGAAGATATAACGAGCAGA 70624
Query 60163 TGCTGCGTCCTTGCCACCCATAAGACGGGTTCCAAATTGTCCGTTTGGCTGGAATAGATT 60222
|||||||| || ||||| |||||| || |||||||| ||||| || | | |||||
Sbjct 70625 AGCTGCGTCTTTACCACCTGCAAGACGAGTACCAAATTGGCCGTTGGGATCCAGCAGATT 70684
Query 60223 AATGTTGTTAGAGCCTACGAAATTTTGAGCGAGACCAACAATAGCACCATTTAAACTGGC 60282
||||||||| ||| ||||| ||||| || | ||| ||||| | | | ||||||||
Sbjct 70685 GATGTTGTTACTGCCGACGAAGTTTTGTGCTAAACCGACAATGGTGGAAGTCAAACTGGC 70744
Query 60283 TTCACCGTGATGATATCCAGAATGTTCTGAAACATATCCACTGAATTGTGCGACTTTAAT 60342
|||||| || || ||| | | | || ||||| || || | || ||||| || ||
Sbjct 70745 TTCACCATGGTGGTATGCGGTTTTCTCCGAAACGTAGCCGGCAAGCTGAGCGACCTTGAT 70804
Query 60343 TTCGGAGTGGAGTTTTTTCTTGAA 60366
||| | ||| ||| ||||||
Sbjct 70805 TTCTTTGGTGAGGTTTCGCTTGAA 70828
>seq185
Length=108970
Score = 107 bits (118), Expect = 6e-18
Identities = 422/661 (64%), Gaps = 7/661 (1%)
Strand=Plus/Minus
Query 155664 TTGATGGTGCCTAAATTCTTCTGGTTAGATTTACTGTTACAAGCATCCTTGTATAGAATG 155723
|||||||| || | | ||| ||||| || || ||| |||||||||||| |||
Sbjct 95225 TTGATGGTACCAAGGTGCTTTTGGTTGGACTTGGAGTTGGCAGCATCCTTGTAGCAGATG 95166
Query 155724 TATGGGGTTCCTGTCTCCATCTGTGCGTCCAGAATCTTTAGCCAGAGGTCACGGGCATTA 155783
|| ||| || ||||| | || || || || || | ||| || | |||| ||
Sbjct 95165 TAAGGGACACCAGTCTCGGTTTGAGCCTCGAGGATGGCGAACCAAAGCTTCTGGGCTTTG 95106
Query 155784 ATTTGCTTGTTGTATCTGCCTTCCGACTCATATTTCATATACAGCGTTCGGTAATCCTCA 155843
|| || | |||| | | ||| || || ||| ||| || | || |||
Sbjct 95105 ATAGTTTTCCTTCCCTTGCCCTGCCTCTCGTAGCTCTCATAAAGCTTTTCAAATTCTTCA 95046
Query 155844 CCGTAACAATCACTCAGTCCAGGGCACTTATCGGGGCAAAACAGCGACCAAATTTTATTA 155903
|||||| || ||||||||||||| |||| || | || | |||| ||
Sbjct 95045 CCGTAAACGTCGGCAAGTCCAGGGCACTCGGCGGGACACATAAGAGTCCAATCCCCAT-- 94988
Query 155904 CCGATT--ACACGCTCCATAAATACATCACTCGCCCAAATAGCATAGAAAAGGTCCCTTG 155961
| |||| ||||||| ||| || | ||| ||| | || |||||||| || | |
Sbjct 94987 CGGATTCGACACGCTTCATGAAAAGATCGGAGATCCAGAGGGCGTAGAAAAGATCACGAG 94928
Query 155962 CCTTTGACTCCTCATCGCCGTGATTCTTCCGTAGCTCTAAGAATTCCTCAATATCAGGAT 156021
| | |||||| | || || ||||||| || || | ||| || | ||||| |
Sbjct 94927 CTCGTACCTCCTCCTTACCATGGTTCTTCCTTAAGTCAATGAAGTCAAATACATCAGCGT 94868
Query 156022 GGTGTGGCTCCAGATACATAGCAAAACTACCATTCCTCTTG---CCACCCTGATCTACAT 156078
| ||||| ||||| || || || |||| | |||| ||||| ||||| || |
Sbjct 94867 GCCAAGGCTCAAGATAGATGGCGAAGGCACCAGGACGCTTGTTACCACCTTGATCAACGT 94808
Query 156079 ACCGAGCAGTCTTATTGAAGACACCTAGCATAGGAATAATACCATTGGAAGTGCCATTGG 156138
| ||||| || | | | | | ||||||||||| || || ||||| |||||||
Sbjct 94807 ATCGAGCTGTGGCGTCGTAAGCTCGGAGCATAGGAATGATGCCGTTGGAGTAACCATTGG 94748
Query 156139 TTCCGCGAATATGCGAACCAGATGAGCGAACATTATGAATATGTAGTCCAATACCACCTG 156198
| ||| ||| | || || | || | ||| ||||| || || ||||||||||| |
Sbjct 94747 TACCGGCAATGTAGGAGCCCTTCGCACGGATATTGTGAATGTGAAGACCAATACCACCGG 94688
Query 156199 ACCATTTAGAAATTTGAGCGCATTCCTTTACAGTATTGAAAATACCTTCAATAGAATCAT 156258
|| || || ||||| || ||| | ||||| | | ||||| ||||| || ||||
Sbjct 94687 CAGTCTTGGAGATCTGAGCACAGGTCTTGAGAGTATCGTAGATACCATCAATGGAGTCAT 94628
Query 156259 CTTCCATTGATAGTAGATAGCACGAACTTAATTGAGGTCGTGGTGTTCCAGCGTTGAATA 156318
| | ||| | | || |||| || | ||| ||||| || || || |||||||| |
Sbjct 94627 CCTTCATGGCCACGAGGAAGCATGATGACATTTGGGGTCGGGGAGTACCGGCGTTGAAAA 94568
Query 156319 G 156319
|
Sbjct 94567 G 94567
>seq449
Length=79778
Score = 102 bits (112), Expect = 2e-16
Identities = 155/221 (70%), Gaps = 0/221 (0%)
Strand=Plus/Minus
Query 133437 TTCCTTGTATTAAAAAGAAATCTGACTGGGCTATTAAATGGATCCAGGACAAGCGTGCGA 133496
|||||||||| |||||| | ||||||||| || ||||||| ||| | |
Sbjct 63771 TTCCTTGTATCCGAAAGAAGGCCGACTGGGCTCTTCGATGGATCTCTGACCAAAAATCTT 63712
Query 133497 GTTTTGCTACTCGTCTCGTTGCTTTTGCTGTAGTAGAGGGCAtttttttCAGTGGTGCGT 133556
|||| | || ||| |||||||||||| || ||||| || || ||| |||| | |
Sbjct 63711 GTTTCGGCGAGCGACTCATTGCTTTTGCTGCCGTGGAGGGTATCTTCTTCTCTGGTTCTT 63652
Query 133557 TCTGCTCTATTTTTTGGCTTAAAAAGCGTGGTATTCTACCTGGACTGTGTTTTTCTAACG 133616
|| || || || |||||||| ||||| ||| | | ||||| || || |||||||
Sbjct 63651 TCGCGTCCATCTTCTGGCTTAAGAAGCGAGGTCTCATGCCTGGTCTCACCTTCTCTAACG 63592
Query 133617 AACTTATTTCAAGGGACGAGGCACTTCACACCGAATTTGCC 133657
| || || || | ||||||| || |||||||| ||||||
Sbjct 63591 AGCTCATCTCTCGAGACGAGGGTCTCCACACCGACTTTGCC 63551
>seq187
Length=48755
Score = 95.1 bits (104), Expect = 4e-14
Identities = 198/287 (69%), Gaps = 10/287 (3%)
Strand=Plus/Minus
Query 302537 TATTTCTTACGGTCATATCATAACCAATCATAATGTCTTCCATACTCTTGATTAAACGAC 302596
||||||| || || ||||||| ||| | | | ||| ||||| |||| || | |
Sbjct 35875 TATTTCTCACAGTACCATCATAAGCAACCTTCAAGTCCTCCATCGCTTTGACCAATCTTC 35816
Query 302597 GCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCAC 302656
|| ||||||||||| || || || ||||| |||||||| | ||| | |||||||
Sbjct 35815 TTTGGATATAACCAGTCTCAGCAGTCTTGACAGCGGTATCAATCAAACCTTCTCGACCAC 35756
Query 302657 CCATAGCATGGAAGAATAGCTCTTCCG--GTCGTAGCCCCCCAATAAAGGAGCTCTCAAC 302714
||||||| ||||| | | |||| | ||| | || | ||| | | ||| | |||||
Sbjct 35755 CCATAGCGTGGAACCAGAATTCTTGTGGAGTC-AAACCACGCAA-ATACGAGTTTTCAAC 35698
Query 302715 GAAACCACGCGCCTCGGG--CG-AATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTT 302771
|||||| || | |||||| || | ||||| ||| | |||||||| | | || ||
Sbjct 35697 GAAACCTCGAGACTCGGGTCCGTAGTCGTC--TCTT-GAGAAGTGTGGTAATGACCGGTG 35641
Query 302772 CTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTCCCA 302818
| | ||| | | |||||| ||||| |||||| ||| || ||||
Sbjct 35640 CCGGAATCCGAACGAGATACGTTTTCCTTCAACGAACTGTTGACCCA 35594
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1471806530551819
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |