Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022221 55.1_202017-07-20] 587 sequences; 18,505,623 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq185 116 5e-20 seq537 93.3 5e-13 >seq185 Length=108970 Score = 116 bits (128), Expect = 5e-20 Identities = 177/252 (70%), Gaps = 0/252 (0%) Strand=Plus/Minus Query 1630066 TGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGAC 1630125 || || ||||| || || ||| ||| | | |||||||| || | || ||||||||| Sbjct 94817 TGATCAACGTATCGAGCTGTGGCGTCGTAAGCTCGGAGCATAGGAATGATGCCGTTGGAG 94758 Query 1630126 TCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCCG 1630185 | || ||||| || || | ||||| ||| || || | ||||| | || || Sbjct 94757 TAACCATTGGTACCGGCAATGTAGGAGCCCTTCGCACGGATATTGTGAATGTGAAGACCA 94698 Query 1630186 ATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTCG 1630245 || || ||||| | ||||||||| | || || ||||| || |||||||| || || Sbjct 94697 ATACCACCGGCAGTCTTGGAGATCTGAGCACAGGTCTTGAGAGTATCGTAGATACCATCA 94638 Query 1630246 ATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGTGCCG 1630305 || ||||| |||||||| ||||||| ||||| || || |||| || | | || ||| Sbjct 94637 ATGGAGTCATCCTTCATGGCCACGAGGAAGCATGATGACATTTGGGGTCGGGGAGTACCG 94578 Query 1630306 GCGTTGAAGAGC 1630317 |||||||| ||| Sbjct 94577 GCGTTGAAAAGC 94566 >seq537 Length=129926 Score = 93.3 bits (102), Expect = 5e-13 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 18256 CAGTCGGGCACGGAGAACGGCCTCACGCTCGGCTCGCCCGTCGGCCTCTTTGTGGCCAAC 18315 ||||| || || ||| ||||| | || || || | || ||||||| |||| |||| Sbjct 103124 CAGTCTGGTACCGAGCACGGCGTTACTCTTGGTACCCCTATCGGCCTTCTTGTCCACAAC 103065 Query 18316 CGCGACCAGCGGCCCGTCGACTATTCCGACATGTGCAAGGTGCCGCGGCCCTCACACGCC 18375 ||||| || || ||||| |||| | | || || || || || ||| Sbjct 103064 AAGGACCAACGACCTCATGACTACGCCGAGACTGACCTTTACCCCCGACCTTCCCATGCC 103005 Query 18376 GACTACACCTACATGGCCAAGTACGGCATCAAGGCGTCGTCGGGCGGAGGCCGGTCGTCT 18435 |||||||||||| | ||||||||||| ||||||| || || ||||| || || |||| Sbjct 103004 GACTACACCTACCTTGCCAAGTACGGTGTCAAGGCCTCTTCTGGCGGTGGTCGTGCGTCC 102945 Query 18436 GCCCGCGAGACCCTCATGCGCGTCGCCGCCGGCGCGGTCGCCGAGAAAT 18484 || || ||||| || || || || || |||||| | || ||||||| Sbjct 102944 GCGCGTGAGACTATCGGACGAGTTGCGGCTGGCGCGATTGCGGAGAAAT 102896 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6107091028031079