Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022221
55.1_202017-07-20] 587 sequences; 18,505,623 total letters
Query= NC_021923.1
Length=140633
Score E
Sequences producing significant alignments: (Bits) Value
seq449 116 3e-21
seq185 87.8 2e-12
>seq449
Length=79778
Score = 116 bits (128), Expect = 3e-21
Identities = 164/228 (72%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
|||||||||||| | || || | ||||| || ||||| || || ||||| || | |
Sbjct 78274 ATGCAGATCTTTGTCAAGACTTTGACCGGAAAGACTATCACTCTTGAAGTCGAGTCGTCT 78333
Query 24764 GACACAGTAGA-AACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822
||||| | || |||| ||| | ||||| || ||||| ||||| || ||||| |||||
Sbjct 78334 GACACTATCGACAACGTTAAGGC-GAAGATTCAGGACAAGGAAGGTATTCCTCCTGATCA 78392
Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882
||||| ||||| ||||| || ||||| ||||||||| | | | || || || ||
Sbjct 78393 GCAACGATTGATTTTTGCTGGTAAACAACTGGAGGATGGTCGTACTCTTTCCGACTACAA 78452
Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930
||| |||||||| || || || ||| | || | || |||| || ||
Sbjct 78453 CATCCAAAAGGAGTCTACCCTTCACCTTGTTCTCCGTCTGCGTGGTGG 78500
Score = 109 bits (120), Expect = 5e-19
Identities = 153/215 (71%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
||||| ||||| | ||||| || ||||| ||||| ||||| || ||||| ||| | |
Sbjct 77767 ATGCAAATCTTCGTCAAAACCCTCACCGGCAAAACCATTACCCTTGAAGTCGAAAGCTCT 77826
Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823
|| || | || | || || |||||||||||||| || || || || || |||||
Sbjct 77827 GATACCATCGACAATGTCAAGGCCAAGATCCAAGACAAGGAGGGTATCCCCCCTGATCAG 77886
Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883
||||| | ||||| ||||| ||||| || || ||| ||| | || ||||| ||
Sbjct 77887 CAACGACTCATCTTCGCCGGAAAACAACTTGAAGATGGCCGAACTCTTTCCGATTACAAT 77946
Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCG 24918
|| |||||||| || || || || | || |||||
Sbjct 77947 ATCCAAAAGGAGTCTACCCTCCATCTCGTCTTGCG 77981
Score = 98.7 bits (108), Expect = 9e-16
Identities = 117/159 (74%), Gaps = 0/159 (0%)
Strand=Plus/Plus
Query 24701 ACGATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCC 24760
|| ||||| || || | || || || |||||||| ||||| || || ||||| || |
Sbjct 77485 ACCATGCAAATTTTCGTCAAGACTCTCACCGGTAAGACTATCACTCTTGAAGTGGAGTCT 77544
Query 24761 ACCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGAT 24820
||||||| | || | || || |||||||||||||| || || || ||||| ||
Sbjct 77545 TCCGACACCATCGACAATGTCAAGGCCAAGATCCAAGACAAGGAGGGTATCCCTCCTGAC 77604
Query 24821 CAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGAT 24859
|| ||||| ||||||||||| || || ||||| || |||
Sbjct 77605 CAGCAACGATTGATCTTTGCTGGTAAGCAGCTTGAAGAT 77643
Score = 89.7 bits (98), Expect = 5e-13
Identities = 136/194 (70%), Gaps = 0/194 (0%)
Strand=Plus/Plus
Query 24725 CTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACCGACACAGTAGAAACGGTAAAA 24784
|| || ||||| || || || || ||||| ||| | | ||| || | || | || ||
Sbjct 78576 CTTACGGGTAAGACAATCACTCTTGAAGTCGAATCGAGCGATACCATCGACAACGTCAAG 78635
Query 24785 CAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGG 24844
|||||||||||||| || || || || || ||||| ||||| | ||||| |||||
Sbjct 78636 GCCAAGATCCAAGACAAGGAGGGTATCCCCCCTGATCAGCAACGACTCATCTTCGCCGGA 78695
Query 24845 AAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCGACACTA 24904
||||| || || ||| ||| | || ||||| || || |||||||| || || ||
Sbjct 78696 AAACAACTTGAAGATGGCCGAACTCTTTCCGATTACAATATCCAAAAGGAGTCTACCCTC 78755
Query 24905 CACTTGGTGTTGCG 24918
|| | || |||||
Sbjct 78756 CATCTCGTCTTGCG 78769
>seq185
Length=108970
Score = 87.8 bits (96), Expect = 2e-12
Identities = 190/279 (68%), Gaps = 9/279 (3%)
Strand=Plus/Minus
Query 139302 CTCGTACTTTTCGTAGAGTTCGTCGAATCGTTCACCGTAGGCGTCAGAAAGATCGCGACA 139361
|||||| | || || || | || ||| ||||||||| |||| | ||| | | ||
Sbjct 95079 CTCGTAGCTCTCATAAAGCTTTTCAAATTCTTCACCGTAAACGTCGGCAAGTCCAGGGCA 95020
Query 139362 CTTGTCAGGACACATGAGCGACCATACGCCGTTCGCCTTGACGCGCCTCATGAACAGATC 139421
|| | | |||||||| || | ||| | || | | | ||| ||| ||||||| |||||
Sbjct 95019 CTCGGCGGGACACATAAGAGTCCAATCCCCATCGGATTCGACACGCTTCATGAAAAGATC 94960
Query 139422 CGGAATCCACAAAGCGAACAGCAAATCGCGCGCCTTCTTATCT--TCCGAACCCATGTTA 139479
| ||||| | ||| | | | ||| || || || || || ||| ||| ||| |
Sbjct 94959 GGAGATCCAGAGGGCGTAGAAAAGATCACGAGC--TCGTACCTCCTCCTTACC-ATGGTT 94903
Query 139480 CGTT-TCATGTTAAGGAAATCAAAAACGTCAGCGTGCCATGGTTCCAGATAGATGGCCAT 139538
| | | | || || ||| ||||| || ||||||||||| || || ||||||||||| |
Sbjct 94902 CTTCCTTAAGTCAATGAAGTCAAATACATCAGCGTGCCAAGGCTCAAGATAGATGGCGAA 94843
Query 139539 TGCGCCTTTCCGTTTG---CCACCTTGATCGACGTGTCG 139574
|| || || ||| ||||||||||| |||| |||
Sbjct 94842 GGCACCAGGACGCTTGTTACCACCTTGATCAACGTATCG 94804
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 449894298876360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |