Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022221 55.1_202017-07-20] 587 sequences; 18,505,623 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq449 104 2e-17 >seq449 Length=79778 Score = 104 bits (114), Expect = 2e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || || ||||||| ||| |||||| || ||||| ||||| || || | || |||| Sbjct 78485 AGAACAAGGTGAAGGGTAGACTCCTTTTGGATGTTGTAGTCGGAAAGAGTACGACCATCC 78426 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 |||||||| || || || || |||| ||||||||| || | || | || |||||||| Sbjct 78425 TCCAGTTGTTTACCAGCAAAAATCAATCGTTGCTGATCAGGAGGAATACCTTCCTTGTCC 78366 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || || ||| | || | ||| | |||||| |||| || || ||| Sbjct 78365 TGAATCTTCGCCTTAACGTTGTCGATAGTGTCAGACGACTCGACTTCAAGAGTGATAGTC 78306 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||||| || | ||||| |||||||||||||| Sbjct 78305 TTTCCGGTCAAAGTCTTGACAAAGATCTGCAT 78274 Score = 102 bits (112), Expect = 5e-17 Identities = 154/217 (71%), Gaps = 8/217 (4%) Strand=Plus/Minus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 || ||| || || | ||| |||||| || || || || || || || | || |||| Sbjct 77979 CAAGACGAGATGGAGGGTAGACTCCTTTTGGATATTGTAATCGGAAAGAGTTCGGCCATC 77920 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 || ||||| |||||||||||||| ||||||||||| || | || | ||||||||||| Sbjct 77919 TTCAAGTTGTTTTCCGGCGAAGATGAGTCGTTGCTGATCAGGGGGGATACCCTCCTTGTC 77860 Query 34885 GTTTATTTTTTGTTTGACGGATGCTATCGAT----TCATTGGCCTCGACATCAACGGTTA 34940 | || || ||||| || | ||||| ||| | ||||| |||| ||| | Sbjct 77859 TTGGATCTTGGCCTTGAC--AT--TGTCGATGGTATCAGAGCTTTCGACTTCAAGGGTAA 77804 Query 34941 TGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 |||| || || |||||||| || || ||||| ||||| Sbjct 77803 TGGTTTTGCCGGTGAGGGTTTTGACGAAGATTTGCAT 77767 Score = 95.1 bits (104), Expect = 8e-15 Identities = 115/157 (73%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 34821 CATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCT 34880 |||| ||||||||||||||||||||||||| |||||| ||||| | || | ||||||| Sbjct 78151 CATCTTCCAGTTGCTTTCCGGCGAAGATCAATCGTTGTTGGTCAGGAGGGATACCCTCCT 78092 Query 34881 TGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTA 34940 |||| | || || ||||| | || | ||| || || || |||| || | Sbjct 78091 TGTCCTGAATCTTCGCCTTGACATTGTCAATGGTGTCAGAGGATTCAACCTCAAGAGTGA 78032 Query 34941 TGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 | |||||||| || || ||||| || || |||||||| Sbjct 78031 TAGTCTTTCCGGTAAGAGTCTTGACGAAAATCTGCAT 77995 Score = 86.0 bits (94), Expect = 4e-12 Identities = 137/197 (70%), Gaps = 10/197 (5%) Strand=Plus/Minus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 || ||| || || | ||| |||||| || || || || || || || | || |||| Sbjct 78767 CAAGACGAGATGGAGGGTAGACTCCTTTTGGATATTGTAATCGGAAAGAGTTCGGCCATC 78708 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 || ||||| |||||||||||||| ||||||||||| || | || | ||||||||||| Sbjct 78707 TTCAAGTTGTTTTCCGGCGAAGATGAGTCGTTGCTGATCAGGGGGGATACCCTCCTTGTC 78648 Query 34885 GTTTATTTTTTGTTTGACG-----GATGCTATCGATTCATTGGCCTCGACATCAACGGTT 34939 | || || |||||| |||| ||||| | || ||||| |||| || Sbjct 78647 TTGGATCTTGGCCTTGACGTTGTCGATGGTATCGCTCGAT-----TCGACTTCAAGAGTG 78593 Query 34940 ATGGTCTTTCCCGTGAG 34956 || ||||| ||||| || Sbjct 78592 ATTGTCTTACCCGTAAG 78576 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325690469973353