Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022221
55.1_202017-07-20] 587 sequences; 18,505,623 total letters
Query= NC_024446.1
Length=306862
Score E
Sequences producing significant alignments: (Bits) Value
seq449 134 3e-26
>seq449
Length=79778
Score = 134 bits (148), Expect = 3e-26
Identities = 167/229 (73%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641
|||| |||| | ||||| || | || || ||||| || || || ||||| ||||| |
Sbjct 77995 TACCACCTCGGAGACGCAAGACGAGATGGAGGGTAGACTCCTTTTGGATATTGTAATCGG 77936
Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701
| ||| ||| || ||||| ||||||||||| || ||||| |||| ||| ||||| || |
Sbjct 77935 AAAGAGTTCGGCCATCTTCAAGTTGTTTTCCGGCGAAGATGAGTCGTTGCTGATCAGGGG 77876
Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761
| || || ||||| ||||| ||||| || || ||||| || || |||||| ||| |
Sbjct 77875 GGATACCCTCCTTGTCTTGGATCTTGGCCTTGACATTGTCGATGGTATCAGAGCTTTCGA 77816
Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810
|||| | || || || ||||| || | || || || || || |||||
Sbjct 77815 CTTCAAGGGTAATGGTTTTGCCGGTGAGGGTTTTGACGAAGATTTGCAT 77767
Score = 132 bits (146), Expect = 9e-26
Identities = 154/208 (74%), Gaps = 0/208 (0%)
Strand=Plus/Minus
Query 82579 ACCTACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAAT 82638
|| |||| |||| | ||||| || | || || ||||| || || || ||||| ||||
Sbjct 78786 ACATACCACCTCGGAGACGCAAGACGAGATGGAGGGTAGACTCCTTTTGGATATTGTAAT 78727
Query 82639 CAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTG 82698
| || ||| ||| || ||||| ||||||||||| || ||||| |||| ||| ||||| |
Sbjct 78726 CGGAAAGAGTTCGGCCATCTTCAAGTTGTTTTCCGGCGAAGATGAGTCGTTGCTGATCAG 78667
Query 82699 GAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTT 82758
| || || || ||||| ||||| ||||| || || || || || || ||||| | | ||
Sbjct 78666 GGGGGATACCCTCCTTGTCTTGGATCTTGGCCTTGACGTTGTCGATGGTATCGCTCGATT 78607
Query 82759 CTACTTCCAAAGTTATCGTCTTGCCTGT 82786
| ||||| | ||| || ||||| || ||
Sbjct 78606 CGACTTCAAGAGTGATTGTCTTACCCGT 78579
Score = 102 bits (112), Expect = 2e-16
Identities = 128/176 (73%), Gaps = 0/176 (0%)
Strand=Plus/Minus
Query 82635 TAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGA 82694
|| || || ||| | || || ||||| || || || ||||||||||| | || ||| ||
Sbjct 77663 TAGTCGGAGAGAGTCCTGCCATCTTCAAGCTGCTTACCAGCAAAGATCAATCGTTGCTGG 77604
Query 82695 TCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTA 82754
|| ||||| || || ||||| ||||| ||||| || || ||||| || || || || |
Sbjct 77603 TCAGGAGGGATACCCTCCTTGTCTTGGATCTTGGCCTTGACATTGTCGATGGTGTCGGAA 77544
Query 82755 GGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810
| || ||||| | ||| || ||||| || || | ||||| || || || |||||
Sbjct 77543 GACTCCACTTCAAGAGTGATAGTCTTACCGGTGAGAGTCTTGACGAAAATTTGCAT 77488
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 981819815738993
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |