Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022221
55.1_202017-07-20] 587 sequences; 18,505,623 total letters
Query= NC_025257.1
Length=102759
Score E
Sequences producing significant alignments: (Bits) Value
seq449 114 8e-21
>seq449
Length=79778
Score = 114 bits (126), Expect = 8e-21
Identities = 165/230 (72%), Gaps = 2/230 (1%)
Strand=Plus/Minus
Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581
|||||| | || ||| | || | || || || ||| ||||| |||||||| |||||
Sbjct 78501 ACCACCACGCAGACGGAGAACAAGGTGAAGGGTAGACTCCTTTTGGATGTTGTAGTCGGA 78442
Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641
|| || || | || |||| |||||| || ||||||||||| || |||||||| | ||
Sbjct 78441 AAGAGTACGACCATCCTCCAGTTGTTTACCAGCAAAAATCAATCGTTGCTGATCAGGAGG 78382
Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700
| |||||| ||||| ||| ||| | | ||| | ||| | ||||| || || |
Sbjct 78381 AATACCTTCCTTGTCCTGAATCTTC-GCCTTAACGTTGTCGATAGTGTCAGACGACTCGA 78323
Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750
| |||| ||||| || || || || || || || |||||||||||||||
Sbjct 78322 CTTCAAGAGTGATAGTCTTTCCGGTCAAAGTCTTGACAAAGATCTGCATA 78273
Score = 87.8 bits (96), Expect = 1e-12
Identities = 144/205 (70%), Gaps = 2/205 (1%)
Strand=Plus/Minus
Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581
|||||||| | ||| || || | ||| || || ||| ||||| || |||||||||||
Sbjct 78782 ACCACCTCGGAGACGCAAGACGAGATGGAGGGTAGACTCCTTTTGGATATTGTAATCGGA 78723
Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641
|| || || | || || | |||||||||||| || || | || |||||||| | ||
Sbjct 78722 AAGAGTTCGGCCATCTTCAAGTTGTTTTCCGGCGAAGATGAGTCGTTGCTGATCAGGGGG 78663
Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700
| ||| || ||||| || || | | || | ||| | ||| ||||| ||||| |
Sbjct 78662 GATACCCTCCTTGTCTTGGATCTT-GGCCTTGACGTTGTCGATGGTATCGCTCGATTCGA 78604
Query 33701 CGTCAACCGTGATCGTTTTACCTGT 33725
| |||| ||||| || ||||| ||
Sbjct 78603 CTTCAAGAGTGATTGTCTTACCCGT 78579
Score = 86.0 bits (94), Expect = 4e-12
Identities = 161/233 (69%), Gaps = 8/233 (3%)
Strand=Plus/Minus
Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581
|||||||| | ||| || || | ||| || || ||| ||||| || |||||||||||
Sbjct 77994 ACCACCTCGGAGACGCAAGACGAGATGGAGGGTAGACTCCTTTTGGATATTGTAATCGGA 77935
Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641
|| || || | || || | |||||||||||| || || | || |||||||| | ||
Sbjct 77934 AAGAGTTCGGCCATCTTCAAGTTGTTTTCCGGCGAAGATGAGTCGTTGCTGATCAGGGGG 77875
Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTC---GCTTGATT 33697
| ||| || ||||| || || | | |||| ||| | ||| || ||| ||
Sbjct 77874 GATACCCTCCTTGTCTTGGATCTT-GGCCTTGACATTGTCGATGGTATCAGAGCT---TT 77819
Query 33698 CCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750
| || |||| || || ||||| || || | ||||| || ||||| ||||||
Sbjct 77818 CGACTTCAAGGGTAATGGTTTTGCCGGTGAGGGTTTTGACGAAGATTTGCATA 77766
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 328701648431040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |