Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022221 55.1_202017-07-20] 587 sequences; 18,505,623 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq449 109 1e-18 >seq449 Length=79778 Score = 109 bits (120), Expect = 1e-18 Identities = 149/208 (72%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 206184 CAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATC 206243 |||||| ||||| || ||||| || || | ||||| ||||| ||||| || |||| Sbjct 77781 CAAAACCCTCACCGGCAAAACCATTACCCTTGAAGTCGAAAGCTCTGATACCATCGACAA 77840 Query 206244 AGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 || ||| ||||| ||||| || || || || || || ||| |||| ||||| Sbjct 77841 TGTCAAGGCCAAGATCCAAGACAAGGAGGGTATCCCCCCTGATCAGCAACGACTCATCTT 77900 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 ||||||||| || | |||||||| | ||| | |||||||||| |||| || ||||| Sbjct 77901 CGCCGGAAAACAACTTGAAGATGGCCGAACTCTTTCCGATTACAATATCCAAAAGGAGTC 77960 Query 206364 TACTCTTCACCTTGTTTTGAGACTTCGA 206391 ||| || || || || ||| | || ||| Sbjct 77961 TACCCTCCATCTCGTCTTGCGTCTCCGA 77988 Score = 98.7 bits (108), Expect = 2e-15 Identities = 146/207 (71%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| ||| || | || ||||| || |||||| | ||||| || |||||| Sbjct 78277 CAGATCTTTGTCAAGACTTTGACCGGAAAGACTATCACTCTTGAAGTCGAGTCGTCTGAC 78336 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || |||| || ||| |||||||| || || ||||| ||| || || ||| Sbjct 78337 ACTATCGACAACGTTAAGGCGAAGATTCAGGACAAGGAAGGTATTCCTCCTGATCAGCAA 78396 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 || | || || || || || || |||| ||||| | ||| | |||| |||||| || Sbjct 78397 CGATTGATTTTTGCTGGTAAACAACTGGAGGATGGTCGTACTCTTTCCGACTACAACATC 78456 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTT 206379 || || |||||||| |||||||||||| Sbjct 78457 CAAAAGGAGTCTACCCTTCACCTTGTT 78483 Score = 86.0 bits (94), Expect = 1e-11 Identities = 124/175 (71%), Gaps = 0/175 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || ||| || || || ||||| || |||||| | || || ||| |||||| Sbjct 77998 CAGATTTTCGTCAAGACTCTTACCGGAAAGACTATCACTCTTGAGGTTGAATCCTCTGAC 78057 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | || || ||| |||||||| || || || || || || ||| ||| Sbjct 78058 ACCATTGACAATGTCAAGGCGAAGATTCAGGACAAGGAGGGTATCCCTCCTGACCAACAA 78117 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACA 206347 || | ||||||||||||||||| |||||||||| | |||||| | ||||||| Sbjct 78118 CGATTGATCTTCGCCGGAAAGCAACTGGAAGATGGTCGAACTTTGTCTGATTACA 78172 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181811911599627