Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022221 55.1_202017-07-20] 587 sequences; 18,505,623 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq185 192 7e-44 seq449 165 9e-36 seq90 102 1e-16 >seq185 Length=108970 Score = 192 bits (212), Expect = 7e-44 Identities = 805/1255 (64%), Gaps = 37/1255 (3%) Strand=Plus/Plus Query 104336 CTCTTCAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAG 104395 || ||||| || ||||| || ||||||||||||| |||||||| | |||| ||| Sbjct 94567 CTTTTCAACGCCGGTACTCCCCGACCCCAAATGTCATCATGCTTCCTCGTGGCCATGAAG 94626 Query 104396 GAGGACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGG 104455 || ||||| || | |||||||| | ||||| | | ||||| || ||||| ||| Sbjct 94627 GATGACTCCATTGATGGTATCTACGATACTCTCAAGACCTGTGCTCAGATCTCCAAGACT 94686 Query 104456 GCTGGGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGG 104515 || || |||||||| | ||||| || || | | || || || ||| || Sbjct 94687 GCCGGTGGTATTGGTCTTCACATTCACAATATCCGTGCGAAGGGCTCCTACATTGCCGGT 94746 Query 104516 ACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGC 104575 || |||||| | || | || || ||||| ||||| || | | |||||||||| || Sbjct 94747 ACCAATGGTTACTCCAACGGCATCATTCCTATGCTCCGAGCTTACGACGCCACAGCTCGA 94806 Query 104576 TATGTAAATCAAGCTGG------GCGTCGAAAGGGATCTATCGCAGTCTATCTTGAGCCA 104629 || || |||||| ||| ||||| || | |||| ||||||||||||| Sbjct 94807 TACGTTGATCAAGGTGGTAACAAGCGTCCT---GGTGCCTTCGCCATCTATCTTGAGCCT 94863 Query 104630 TGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGCG 104689 |||||||| ||| | | || ||| |||| || | ||||| ||| | ||||||| Sbjct 94864 TGGCACGCTGATGTATTTGACTTCATTGACTTAAGGAAGAACCATGGTAAGGAGGAGGTA 94923 Query 104690 CGGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAG 104749 || || ||||| |||| ||| |||||||| | ||||| ||||||||| | || || Sbjct 94924 CGAGCTCGTGATCTTTTCTACGCCCTCTGGATCTCCGATCTTTTCATGAAGCGTGTCGAA 94983 Query 104750 GAGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGATGCCGTG 104809 ||| ||||| |||| | ||||| | | || ||||| || |||| | Sbjct 94984 TCCGATGGGGATTGGACTCTTATGTGTCCCGCCGAGTGCCCTGGACTTGCCGACGTTTAC 95043 Query 104810 GGTGAGGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCGGGCGACTG-CGAC 104868 ||||| || |||||| ||||| | ||||| || | ||| | | || | || Sbjct 95044 GGTGAAGAATTTGAAAAGCTTTATGAGAGCTACGA-GAGGCAGGGCAAGGGAAGGAAAAC 95102 Query 104869 GGTGCCAGCTGCCGATG-TGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACAC 104927 | ||| | || | | ||| || || ||| || ||||||||||||||||| | Sbjct 95103 TATCAAAGC-CCAGAAGCTTTGGTTCGCCATCCTCGAGGCTCAAACCGAGACTGGTGTCC 95161 Query 104928 CATACATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGA 104987 | ||||| ||||| || || ||| ||| || |||||| | | ||| | Sbjct 95162 CTTACATCTGCTACAAGGATGCTGCCAACTCCAAGTCCAACCAAAAGCACCTTGGTACCA 95221 Query 104988 TCAA---GAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGG 105044 |||| ||| || |||||||| |||||| |||| | | | ||||| | Sbjct 95222 TCAAATCCAGT---AACCTCTGTACTGAAATCATGGAGTATTCTTCTCCTGATGAAGTTG 95278 Query 105045 CTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAG-ACA 105103 |||| ||||| || || || | ||||| || | || || | || || | Sbjct 95279 CTGTCTGTAATCTTGCTTCTCTTGCTCTTCCTGCCTTCGTAGACCTTGA-ACGTCGCGTC 95337 Query 105104 TTTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAACAGAGTT 105163 | ||| | |||| || ||||| |||| || ||| || || ||||| ||| || Sbjct 95338 TATGACTTCAAAAAGCTGCACGAGATTACCAAGGTTGTTACAAAGAACCTTGACACTGTA 95397 Query 105164 ATTGATAGAAATTTTTACCCCGT---TGAGACTGCTCGTAAATCTAATATGAGACACCGT 105220 || | || | || || || |||| || || || || || ||| | || || Sbjct 95398 ATCACCCGTAACTACTATCCAGTGCCTGAG---GCCCGCAACTCCAACATGCGCCATCGA 95454 Query 105221 CCAATTGGTCTCGGTGTTCAGGGTCTCGCGGATGTATTCATTCTTTGTCGCCACGCATTT 105280 || ||||||| ||||| |||||||| || || | ||||| |||| | || Sbjct 95455 CCTGTTGGTCTTGGTGTCCAGGGTCTTGCCGACGCTTTCATGGCCCTTCGCATGCCGTTC 95514 Query 105281 GATTCCGACGAAGCGAAGGAAATCAATGCGCGCATATTTGAGACCATGTATCACGCCGCT 105340 || |||| || || | |||| ||||| | || || ||||| || || ||||| || Sbjct 95515 GACTCCGCTGAGGCTAGGGAACTCAATATCCAGATCTTCGAGACGATATACCACGCGGCA 95574 Query 105341 CTTGAGGCGAGTTCAGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCT 105400 ||||||||| | || | || |||| |||| | |||||| | | || |||||| Sbjct 95575 CTTGAGGCGTCGTGCGAACTTGCCGAGGAGTTTGGTACCTATGAATCTTACGAAGGTTCT 95634 Query 105401 CCAGCTTCAC-AAGGG-GTGCTTCAATTTGATATGTGGGAAGGTG---AGACCAAGCTTC 105455 || | || | ||||| | ||||| | || ||||||| ||| ||| | ||| Sbjct 95635 CC--CATCTCTAAGGGTATCCTTCAGTACGACATGTGGGGCCGTGTTCCCACCGACCTT- 95691 Query 105456 ACTACGACTGGGAAGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTCC 105515 | |||||| || || |||| ||| |||| ||| | | ||| | | | Sbjct 95692 --TGGGACTGGACAGAGCTGAAGGCCAAGATCGCACAGAACGGTGTGAGGAACTCTTTGC 95749 Query 105516 TCATGGCTCCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATG 105570 || | || || ||||| || ||||| || | |||||||||||| || ||||| Sbjct 95750 TCGTCGCCCCTATGCCTACTGCCTCAACGTCTCAAATCTTGGGTTGGAACGAATG 95804 >seq449 Length=79778 Score = 165 bits (182), Expect = 9e-36 Identities = 215/289 (74%), Gaps = 10/289 (3%) Strand=Plus/Minus Query 94672 CTCATAGACAAGTATATTAAGGATGGTGCTGAGAAGAAGCAGC-TCTTTGAAGCCATCCA 94730 ||||| |||| || |||||||| |||| || ||| | | ||||||| || || | Sbjct 63835 CTCATCGACACCTACATTAAGGACACTGCTC-GACGAAACTTCCTCTTTGACGCTATGGA 63777 Query 94731 AACAGTTCCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTT---TGATACAAA 94787 || |||| ||||| | |||||| || || |||||| | ||| | ||| ||| Sbjct 63776 CACCATTCCTTGTATCCGAAAGAAGGCCGACTGGGCTCTTCGATGGATCTCTGACCAAAA 63717 Query 94788 GTCGCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTC 94847 || ||| | || ||||||||| | || ||||| || ||||||||||||||||| Sbjct 63716 ATCTTGTTTCG--GC-GAGCGACTCATTGCTTTTGCTGCCGTGGAGGGTATCTTCTTCTC 63660 Query 94848 TGGTTCCTTCTGCG-CTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCT 94906 |||||| ||| ||| | || | ||||| |||||||||||||||||||| |||||| || Sbjct 63659 TGGTTCTTTC-GCGTCCATCTTCTGGCTTAAGAAGCGAGGTCTCATGCCTGGTCTCACCT 63601 Query 94907 TCTCCAACGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 94955 |||| |||||||| |||||||| |||||||| |||||| || ||||| Sbjct 63600 TCTCTAACGAGCTCATCTCTCGAGACGAGGGTCTCCACACCGACTTTGC 63552 >seq90 Length=80925 Score = 102 bits (112), Expect = 1e-16 Identities = 282/427 (66%), Gaps = 4/427 (1%) Strand=Plus/Plus Query 168277 ACCCGTACCGATACCCTCTGTACCGTTCACGAGAACCATGGGGAGTGTTGGCATGTAGAA 168336 ||| ||||||||||| |||| ||| || | | ||||| || | || |||||| | | Sbjct 70451 ACCAGTACCGATACCATCTGCACCATTGATCAATACCATTGGAACGGTGGGCATGAAATA 70510 Query 168337 GTCTGGCTCAATGGGGCGACCATCGTCATCCAAATAGTTGAGAATTGGATCATCTCTCGG 168396 ||||| |||||| | |||||| || |||| |||||||| | |||||| || Sbjct 70511 ATCTGGTTCAATGCGCATACCATCCTCGACCAAGTAGTTGAGCAACCCGTCATCTGCAGG 70570 Query 168397 ATCAAAGATCTTTCG-GGCATCTTTTGTGAGCTTTGTAAAGATATACCTCGTTTGAGACG 168455 | ||||| ||| | |||| || || ||||| |||||||| | | || | Sbjct 70571 GTGGAAGATTGCTCGAGTCATC-CGTGGAAGGTTTGTGAAGATATAACGAGCAGAAGCTG 70629 Query 168456 CATCCTTACCACCCATGAGACGCGTACCAAACTGACCACACGGCTCAAGAAGATTGATAT 168515 | || |||||||| ||||| |||||||| || || || || || |||||||| | Sbjct 70630 CGTCTTTACCACCTGCAAGACGAGTACCAAATTGGCCGTTGGGATCCAGCAGATTGATGT 70689 Query 168516 TGTTTGAACCCATGTAGTCATTCGCCAACTTGACAATCGTGTCCGCGAGAGAGACTTCAC 168575 |||| || | | ||| | || || |||||| ||| | | | | |||||| Sbjct 70690 TGTTACTGCCGACGAAGTTTTGTGCTAAACCGACAATGGTGGAAGTCAAACTGGCTTCAC 70749 Query 168576 CGTGGTGGTACGCACTCTTCTCTGCGACAAATGCCGCCAA-CTGCGCCACTTTCATCTCA 168634 | |||||||| || | ||||| | || | |||| ||| ||| || || || || || Sbjct 70750 CATGGTGGTATGCGGTTTTCTCCGAAACGTA-GCCGGCAAGCTGAGCGACCTTGATTTCT 70808 Query 168635 TCCTTGAGATTCTTGTGGAAGCATGCGTACATAACCTTGCGTTGCGAAGGCTTGAGACCA 168694 | |||| || | ||| || | | | |||||| || || ||| |||||||| Sbjct 70809 TTGGTGAGGTTTCGCTTGAAACAACCAAAGAGAACCTTTCGCTGACCAGGTTTGAGACCG 70868 Query 168695 TCCGCCA 168701 || |||| Sbjct 70869 TCGGCCA 70875 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583256520323880