Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022221 55.1_202017-07-20] 587 sequences; 18,505,623 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq449 185 3e-41 seq407 145 2e-29 seq404 145 2e-29 seq405 107 6e-18 seq68 96.9 1e-14 seq5 87.8 5e-12 >seq449 Length=79778 Score = 185 bits (204), Expect = 3e-41 Identities = 182/235 (77%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 ||| |||||||||||| | | |||||||| ||||| |||||||| ||||| || || | Sbjct 78508 TTTGCATACCACCACGCAGACGGAGAACAAGGTGAAGGGTAGACTCCTTTTGGATGTTGT 78449 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 | || || | || || ||||| || |||||||| |||||||| || | |||||||||| Sbjct 78448 AGTCGGAAAGAGTACGACCATCCTCCAGTTGTTTACCAGCAAAAATCAATCGTTGCTGAT 78389 Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682 |||||||||| ||||| || |||||||| || || || || || || || | ||||| | Sbjct 78388 CAGGAGGAATACCTTCCTTGTCCTGAATCTTCGCCTTAACGTTGTCGATAGTGTCAGACG 78329 Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || |||||||| || | ||||||||||| | || || ||||| |||||||| Sbjct 78328 ACTCGACTTCAAGAGTGATAGTCTTTCCGGTCAAAGTCTTGACAAAGATCTGCAT 78274 Score = 174 bits (192), Expect = 5e-38 Identities = 177/231 (77%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 ||||||||| || | | | || ||||| || |||||||| ||||| ||||| ||||| Sbjct 77997 CATACCACCTCGGAGACGCAAGACGAGATGGAGGGTAGACTCCTTTTGGATATTGTAATC 77938 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || | ||||| |||||||||||||||||||| || ||||| || |||||||||||||| Sbjct 77937 GGAAAGAGTTCGGCCATCTTCAAGTTGTTTTCCGGCGAAGATGAGTCGTTGCTGATCAGG 77878 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 || || || || || || || || || || || ||||| || || | |||||| ||| Sbjct 77877 GGGGATACCCTCCTTGTCTTGGATCTTGGCCTTGACATTGTCGATGGTATCAGAGCTTTC 77818 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 |||||||| |||| || || ||||| || ||||| || || || ||||| Sbjct 77817 GACTTCAAGGGTAATGGTTTTGCCGGTGAGGGTTTTGACGAAGATTTGCAT 77767 Score = 150 bits (166), Expect = 5e-31 Identities = 139/176 (79%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 140562 TAATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGA 140621 |||||||| || ||||| |||||||| ||||| ||||| || ||||| | ||||| || Sbjct 78170 TAATCAGACAAAGTTCGACCATCTTCCAGTTGCTTTCCGGCGAAGATCAATCGTTGTTGG 78111 Query 140622 TCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGAT 140681 |||||||| || || || || |||||||| || || || ||||| ||||| | ||||| Sbjct 78110 TCAGGAGGGATACCCTCCTTGTCCTGAATCTTCGCCTTGACATTGTCAATGGTGTCAGAG 78051 Query 140682 GGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 | |||||| ||||| || | ||||||||||| || || || || ||||||||||| Sbjct 78050 GATTCAACCTCAAGAGTGATAGTCTTTCCGGTAAGAGTCTTGACGAAAATCTGCAT 77995 Score = 149 bits (164), Expect = 2e-30 Identities = 160/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 140505 TACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAA 140564 ||||||||||| || | | | || ||||| || |||||||| ||||| ||||| ||| Sbjct 78787 TACATACCACCTCGGAGACGCAAGACGAGATGGAGGGTAGACTCCTTTTGGATATTGTAA 78728 Query 140565 TCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCA 140624 || || | ||||| |||||||||||||||||||| || ||||| || |||||||||||| Sbjct 78727 TCGGAAAGAGTTCGGCCATCTTCAAGTTGTTTTCCGGCGAAGATGAGTCGTTGCTGATCA 78668 Query 140625 GGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGT 140684 || || || || || || || || || || || || || || || || | ||| | | Sbjct 78667 GGGGGGATACCCTCCTTGTCTTGGATCTTGGCCTTGACGTTGTCGATGGTATCGCTCGAT 78608 Query 140685 TCAACTTCAAGTGTAACTGTCTTTCCGGTTAG 140716 || |||||||| || | |||||| || || || Sbjct 78607 TCGACTTCAAGAGTGATTGTCTTACCCGTAAG 78576 Score = 109 bits (120), Expect = 2e-18 Identities = 119/158 (75%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 140580 CCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCT 140639 ||||||||||| || || ||||||||||| | |||||||| |||||||| || || || Sbjct 77645 CCATCTTCAAGCTGCTTACCAGCAAAGATCAATCGTTGCTGGTCAGGAGGGATACCCTCC 77586 Query 140640 TTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTA 140699 || || || || || || || ||||| || || | || || | || |||||||| || Sbjct 77585 TTGTCTTGGATCTTGGCCTTGACATTGTCGATGGTGTCGGAAGACTCCACTTCAAGAGTG 77526 Query 140700 ACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 | ||||| ||||| || || || || ||||| ||||| Sbjct 77525 ATAGTCTTACCGGTGAGAGTCTTGACGAAAATTTGCAT 77488 >seq407 Length=11167 Score = 145 bits (160), Expect = 2e-29 Identities = 253/368 (69%), Gaps = 0/368 (0%) Strand=Plus/Minus Query 349532 CCCGAAGAAATTTCATCAATGGTTTTAGTTAAAATGAAGGAAATTGCTGAAGCATATTTA 349591 || ||||| ||||| || |||||| | ||| |||||||||| |||||| || || | Sbjct 464 CCTGAAGAGATTTCTTCCATGGTTCTTACTAAGATGAAGGAAACTGCTGAGGCTTACCTT 405 Query 349592 GGTGAAACAGTAACTGATGCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGT 349651 |||| || || | | || ||| | || || || ||||| || || || | || ||| Sbjct 404 GGTGGCACCGTCTCCAAGGCCGTTGTCACCGTCCCCGCCTACTTCAACGACTCTCAACGT 345 Query 349652 TCTGCAACAAAAGATGCTGGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAA 349711 || || || || ||||| |||||| || | | || || | || || || || Sbjct 344 CAGGCTACCAAGGACGCTGGTGCCATTGCCGGTCTCGACGTCCTCCGTATCATCAACGAG 285 Query 349712 CCCACTGCTGCAGCAATTGCATATGGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATT 349771 || ||||| || || || || || || ||||| || | | ||| || || || || Sbjct 284 CCTACTGCCGCTGCTATCGCTTACGGTCTTGACAAGAAGTCTGAGGGCGAGAAGAACGTT 225 Query 349772 CTTATTTTTGATTTAGGTGGTGGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGA 349831 | || || || | |||||||||||||| ||||| || || | || |||| ||||| Sbjct 224 TTGATCTTCGACCTTGGTGGTGGTACTTTCGATGTCTCTCTTTTGACTATTGAGGAGGGT 165 Query 349832 ATTTTTGAAGTTAAAGCAACTGCTGGTGATACACATCTTGGTGGAGAAGATTTTGATAAT 349891 || || || || || || || |||||||| || || |||||||| || || ||||| || Sbjct 164 ATCTTCGAGGTCAAGGCTACCGCTGGTGACACTCACCTTGGTGGTGAGGACTTTGACAAC 105 Query 349892 CGTCTCGT 349899 || || || Sbjct 104 CGACTTGT 97 >seq404 Length=6840 Score = 145 bits (160), Expect = 2e-29 Identities = 253/368 (69%), Gaps = 0/368 (0%) Strand=Plus/Plus Query 349532 CCCGAAGAAATTTCATCAATGGTTTTAGTTAAAATGAAGGAAATTGCTGAAGCATATTTA 349591 ||||||||||| || || ||||| | | || |||||||| | |||||| || || | Sbjct 6473 CCCGAAGAAATCTCTTCCATGGTCCTTATCAAGATGAAGGAGACTGCTGAGGCTTACCTT 6532 Query 349592 GGTGAAACAGTAACTGATGCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGT 349651 |||| || || | | || ||| |||| || || ||||| || || || | || ||| Sbjct 6533 GGTGGCACCGTCTCCAAGGCCGTTGTTACCGTCCCCGCCTACTTCAACGACTCTCAACGT 6592 Query 349652 TCTGCAACAAAAGATGCTGGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAA 349711 || || || || ||||| |||||| || | | || || | || || || || Sbjct 6593 CAGGCTACCAAGGACGCTGGTGCCATTGCCGGTCTCGACGTCCTCCGTATCATCAACGAG 6652 Query 349712 CCCACTGCTGCAGCAATTGCATATGGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATT 349771 || ||||| || || || || || || ||||| || | | ||| || || || || Sbjct 6653 CCTACTGCCGCTGCTATCGCTTACGGTCTTGACAAGAAGTCTGAGGGCGAGAAGAACGTT 6712 Query 349772 CTTATTTTTGATTTAGGTGGTGGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGA 349831 | || || || | |||||||||||||| ||||| || || | || |||| ||||| Sbjct 6713 TTGATCTTCGACCTTGGTGGTGGTACTTTCGATGTCTCTCTTTTGACTATTGAGGAGGGT 6772 Query 349832 ATTTTTGAAGTTAAAGCAACTGCTGGTGATACACATCTTGGTGGAGAAGATTTTGATAAT 349891 || || || || || || || |||||||| || || |||||||| || || ||||| || Sbjct 6773 ATCTTCGAGGTCAAGGCTACCGCTGGTGACACTCACCTTGGTGGTGAGGACTTTGACAAC 6832 Query 349892 CGTCTCGT 349899 || || || Sbjct 6833 CGACTTGT 6840 >seq405 Length=27628 Score = 107 bits (118), Expect = 6e-18 Identities = 193/282 (68%), Gaps = 0/282 (0%) Strand=Plus/Plus Query 349619 ACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCATT 349678 || || || ||||| || || || | || ||| || || || || ||||| |||| Sbjct 1 ACCGTCCCCGCCTACTTCAACGACTCTCAACGTCAGGCTACCAAGGACGCTGGTGCCATT 60 Query 349679 GCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATGGG 349738 || || | | || || | || || || || || ||||| || || || || || || Sbjct 61 GCCGGTCTCGACGTCCTCCGTATCATCAACGAGCCTACTGCCGCTGCTATCGCTTACGGT 120 Query 349739 CTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGTACT 349798 ||||| || | | ||| || || || || | || || || | |||||||||||| Sbjct 121 CTTGACAAGAAGTCTGAGGGCGAGAAGAACGTTTTGATCTTCGACCTTGGTGGTGGTACT 180 Query 349799 TTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCTGGT 349858 || ||||| || || | || |||| ||||| || || || || || || || |||||| Sbjct 181 TTCGATGTCTCTCTTTTGACTATTGAGGAGGGTATCTTCGAGGTCAAGGCTACCGCTGGT 240 Query 349859 GATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTT 349900 || || || |||||||| || || ||||| || || || ||| Sbjct 241 GACACTCACCTTGGTGGTGAGGACTTTGACAACCGACTTGTT 282 >seq68 Length=33655 Score = 96.9 bits (106), Expect = 1e-14 Identities = 185/271 (68%), Gaps = 4/271 (1%) Strand=Plus/Plus Query 349622 GTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCATTGCG 349681 || || ||||| || || || | |||||| || || || || || || |||||| Sbjct 14794 GTTCCTGCCTACTTCAACGACTCTCAGCGTCTCGCCACTAAGGACGCCGGTGCCATTGCC 14853 Query 349682 GGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATGGGCTT 349741 || | | || || | || || || ||||| |||||||| || ||||| || || ||| Sbjct 14854 GGTCTTGAGGTGCTCCGTATTATCAACGAACCTACTGCTGCCGCTATTGCCTACGGTCTT 14913 Query 349742 GATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGTACTTTT 349801 || | | || ||| | || ||| | || || || || || |||||||||||||| Sbjct 14914 GACGAGAAGACTGAGGAGGAGCGAAACGTCCTCATCTTCGACTTGGGTGGTGGTACTTTC 14973 Query 349802 GATGTATCACTACTAACACTTGAAG--AGGGAATTTTTGAAGTTAAAGCAACTGCTGGTG 349859 ||||| || || || || || | | | || | || || || || |||||||||| Sbjct 14974 GATGTCTCTCTTCTTACCATTCAGGGCAAGG--TCTTCTCTGTCAAGGCCACTGCTGGTG 15031 Query 349860 ATACACATCTTGGTGGAGAAGATTTTGATAA 349890 | || ||||||||||| || || || || || Sbjct 15032 ACACTCATCTTGGTGGTGAGGACTTCGACAA 15062 >seq5 Length=47339 Score = 87.8 bits (96), Expect = 5e-12 Identities = 101/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 223710 CTGTATGTAATGCCTCATCTCTTGATATTAATTCATTTGAAAATGTTAATCCAGGCATTA 223769 ||||||| | ||||||| || || || || ||||||||||| | ||||||||| | Sbjct 13338 CTGTATGCATCCCCTCATCCCTGCTGATCAACTCGTTTGAAAATGTCAGTCCAGGCATCA 13279 Query 223770 AACCTCTCTTTTTCATCCAAAATATTGCGCAAAAAGCTCCTGaaaaaaaTATACCTTCTA 223829 | |||||||| || | ||| || ||||| ||||| || ||||| || || ||||| | Sbjct 13278 ACCCTCTCTTCTTTAACCAGAAGATTGCAGCAAAAGACCCAGAAAAGAAAATGCCTTCCA 13219 Query 223830 CACAAGCAAACGCTAC 223845 | || ||||| || || Sbjct 13218 CGCATGCAAAAGCCAC 13203 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515243003866361