Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022221
55.1_202017-07-20] 587 sequences; 18,505,623 total letters
Query= NC_028094.1
Length=473558
Score E
Sequences producing significant alignments: (Bits) Value
seq449 185 3e-41
seq407 145 2e-29
seq404 145 2e-29
seq405 107 6e-18
seq68 96.9 1e-14
seq5 87.8 5e-12
>seq449
Length=79778
Score = 185 bits (204), Expect = 3e-41
Identities = 182/235 (77%), Gaps = 0/235 (0%)
Strand=Plus/Minus
Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562
||| |||||||||||| | | |||||||| ||||| |||||||| ||||| || || |
Sbjct 78508 TTTGCATACCACCACGCAGACGGAGAACAAGGTGAAGGGTAGACTCCTTTTGGATGTTGT 78449
Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622
| || || | || || ||||| || |||||||| |||||||| || | ||||||||||
Sbjct 78448 AGTCGGAAAGAGTACGACCATCCTCCAGTTGTTTACCAGCAAAAATCAATCGTTGCTGAT 78389
Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682
|||||||||| ||||| || |||||||| || || || || || || || | ||||| |
Sbjct 78388 CAGGAGGAATACCTTCCTTGTCCTGAATCTTCGCCTTAACGTTGTCGATAGTGTCAGACG 78329
Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737
|| |||||||| || | ||||||||||| | || || ||||| ||||||||
Sbjct 78328 ACTCGACTTCAAGAGTGATAGTCTTTCCGGTCAAAGTCTTGACAAAGATCTGCAT 78274
Score = 174 bits (192), Expect = 5e-38
Identities = 177/231 (77%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566
||||||||| || | | | || ||||| || |||||||| ||||| ||||| |||||
Sbjct 77997 CATACCACCTCGGAGACGCAAGACGAGATGGAGGGTAGACTCCTTTTGGATATTGTAATC 77938
Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626
|| | ||||| |||||||||||||||||||| || ||||| || ||||||||||||||
Sbjct 77937 GGAAAGAGTTCGGCCATCTTCAAGTTGTTTTCCGGCGAAGATGAGTCGTTGCTGATCAGG 77878
Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686
|| || || || || || || || || || || ||||| || || | |||||| |||
Sbjct 77877 GGGGATACCCTCCTTGTCTTGGATCTTGGCCTTGACATTGTCGATGGTATCAGAGCTTTC 77818
Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737
|||||||| |||| || || ||||| || ||||| || || || |||||
Sbjct 77817 GACTTCAAGGGTAATGGTTTTGCCGGTGAGGGTTTTGACGAAGATTTGCAT 77767
Score = 150 bits (166), Expect = 5e-31
Identities = 139/176 (79%), Gaps = 0/176 (0%)
Strand=Plus/Minus
Query 140562 TAATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGA 140621
|||||||| || ||||| |||||||| ||||| ||||| || ||||| | ||||| ||
Sbjct 78170 TAATCAGACAAAGTTCGACCATCTTCCAGTTGCTTTCCGGCGAAGATCAATCGTTGTTGG 78111
Query 140622 TCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGAT 140681
|||||||| || || || || |||||||| || || || ||||| ||||| | |||||
Sbjct 78110 TCAGGAGGGATACCCTCCTTGTCCTGAATCTTCGCCTTGACATTGTCAATGGTGTCAGAG 78051
Query 140682 GGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737
| |||||| ||||| || | ||||||||||| || || || || |||||||||||
Sbjct 78050 GATTCAACCTCAAGAGTGATAGTCTTTCCGGTAAGAGTCTTGACGAAAATCTGCAT 77995
Score = 149 bits (164), Expect = 2e-30
Identities = 160/212 (75%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 140505 TACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAA 140564
||||||||||| || | | | || ||||| || |||||||| ||||| ||||| |||
Sbjct 78787 TACATACCACCTCGGAGACGCAAGACGAGATGGAGGGTAGACTCCTTTTGGATATTGTAA 78728
Query 140565 TCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCA 140624
|| || | ||||| |||||||||||||||||||| || ||||| || ||||||||||||
Sbjct 78727 TCGGAAAGAGTTCGGCCATCTTCAAGTTGTTTTCCGGCGAAGATGAGTCGTTGCTGATCA 78668
Query 140625 GGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGT 140684
|| || || || || || || || || || || || || || || || | ||| | |
Sbjct 78667 GGGGGGATACCCTCCTTGTCTTGGATCTTGGCCTTGACGTTGTCGATGGTATCGCTCGAT 78608
Query 140685 TCAACTTCAAGTGTAACTGTCTTTCCGGTTAG 140716
|| |||||||| || | |||||| || || ||
Sbjct 78607 TCGACTTCAAGAGTGATTGTCTTACCCGTAAG 78576
Score = 109 bits (120), Expect = 2e-18
Identities = 119/158 (75%), Gaps = 0/158 (0%)
Strand=Plus/Minus
Query 140580 CCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCT 140639
||||||||||| || || ||||||||||| | |||||||| |||||||| || || ||
Sbjct 77645 CCATCTTCAAGCTGCTTACCAGCAAAGATCAATCGTTGCTGGTCAGGAGGGATACCCTCC 77586
Query 140640 TTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTA 140699
|| || || || || || || ||||| || || | || || | || |||||||| ||
Sbjct 77585 TTGTCTTGGATCTTGGCCTTGACATTGTCGATGGTGTCGGAAGACTCCACTTCAAGAGTG 77526
Query 140700 ACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737
| ||||| ||||| || || || || ||||| |||||
Sbjct 77525 ATAGTCTTACCGGTGAGAGTCTTGACGAAAATTTGCAT 77488
>seq407
Length=11167
Score = 145 bits (160), Expect = 2e-29
Identities = 253/368 (69%), Gaps = 0/368 (0%)
Strand=Plus/Minus
Query 349532 CCCGAAGAAATTTCATCAATGGTTTTAGTTAAAATGAAGGAAATTGCTGAAGCATATTTA 349591
|| ||||| ||||| || |||||| | ||| |||||||||| |||||| || || |
Sbjct 464 CCTGAAGAGATTTCTTCCATGGTTCTTACTAAGATGAAGGAAACTGCTGAGGCTTACCTT 405
Query 349592 GGTGAAACAGTAACTGATGCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGT 349651
|||| || || | | || ||| | || || || ||||| || || || | || |||
Sbjct 404 GGTGGCACCGTCTCCAAGGCCGTTGTCACCGTCCCCGCCTACTTCAACGACTCTCAACGT 345
Query 349652 TCTGCAACAAAAGATGCTGGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAA 349711
|| || || || ||||| |||||| || | | || || | || || || ||
Sbjct 344 CAGGCTACCAAGGACGCTGGTGCCATTGCCGGTCTCGACGTCCTCCGTATCATCAACGAG 285
Query 349712 CCCACTGCTGCAGCAATTGCATATGGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATT 349771
|| ||||| || || || || || || ||||| || | | ||| || || || ||
Sbjct 284 CCTACTGCCGCTGCTATCGCTTACGGTCTTGACAAGAAGTCTGAGGGCGAGAAGAACGTT 225
Query 349772 CTTATTTTTGATTTAGGTGGTGGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGA 349831
| || || || | |||||||||||||| ||||| || || | || |||| |||||
Sbjct 224 TTGATCTTCGACCTTGGTGGTGGTACTTTCGATGTCTCTCTTTTGACTATTGAGGAGGGT 165
Query 349832 ATTTTTGAAGTTAAAGCAACTGCTGGTGATACACATCTTGGTGGAGAAGATTTTGATAAT 349891
|| || || || || || || |||||||| || || |||||||| || || ||||| ||
Sbjct 164 ATCTTCGAGGTCAAGGCTACCGCTGGTGACACTCACCTTGGTGGTGAGGACTTTGACAAC 105
Query 349892 CGTCTCGT 349899
|| || ||
Sbjct 104 CGACTTGT 97
>seq404
Length=6840
Score = 145 bits (160), Expect = 2e-29
Identities = 253/368 (69%), Gaps = 0/368 (0%)
Strand=Plus/Plus
Query 349532 CCCGAAGAAATTTCATCAATGGTTTTAGTTAAAATGAAGGAAATTGCTGAAGCATATTTA 349591
||||||||||| || || ||||| | | || |||||||| | |||||| || || |
Sbjct 6473 CCCGAAGAAATCTCTTCCATGGTCCTTATCAAGATGAAGGAGACTGCTGAGGCTTACCTT 6532
Query 349592 GGTGAAACAGTAACTGATGCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGT 349651
|||| || || | | || ||| |||| || || ||||| || || || | || |||
Sbjct 6533 GGTGGCACCGTCTCCAAGGCCGTTGTTACCGTCCCCGCCTACTTCAACGACTCTCAACGT 6592
Query 349652 TCTGCAACAAAAGATGCTGGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAA 349711
|| || || || ||||| |||||| || | | || || | || || || ||
Sbjct 6593 CAGGCTACCAAGGACGCTGGTGCCATTGCCGGTCTCGACGTCCTCCGTATCATCAACGAG 6652
Query 349712 CCCACTGCTGCAGCAATTGCATATGGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATT 349771
|| ||||| || || || || || || ||||| || | | ||| || || || ||
Sbjct 6653 CCTACTGCCGCTGCTATCGCTTACGGTCTTGACAAGAAGTCTGAGGGCGAGAAGAACGTT 6712
Query 349772 CTTATTTTTGATTTAGGTGGTGGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGA 349831
| || || || | |||||||||||||| ||||| || || | || |||| |||||
Sbjct 6713 TTGATCTTCGACCTTGGTGGTGGTACTTTCGATGTCTCTCTTTTGACTATTGAGGAGGGT 6772
Query 349832 ATTTTTGAAGTTAAAGCAACTGCTGGTGATACACATCTTGGTGGAGAAGATTTTGATAAT 349891
|| || || || || || || |||||||| || || |||||||| || || ||||| ||
Sbjct 6773 ATCTTCGAGGTCAAGGCTACCGCTGGTGACACTCACCTTGGTGGTGAGGACTTTGACAAC 6832
Query 349892 CGTCTCGT 349899
|| || ||
Sbjct 6833 CGACTTGT 6840
>seq405
Length=27628
Score = 107 bits (118), Expect = 6e-18
Identities = 193/282 (68%), Gaps = 0/282 (0%)
Strand=Plus/Plus
Query 349619 ACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCATT 349678
|| || || ||||| || || || | || ||| || || || || ||||| ||||
Sbjct 1 ACCGTCCCCGCCTACTTCAACGACTCTCAACGTCAGGCTACCAAGGACGCTGGTGCCATT 60
Query 349679 GCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATGGG 349738
|| || | | || || | || || || || || ||||| || || || || || ||
Sbjct 61 GCCGGTCTCGACGTCCTCCGTATCATCAACGAGCCTACTGCCGCTGCTATCGCTTACGGT 120
Query 349739 CTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGTACT 349798
||||| || | | ||| || || || || | || || || | ||||||||||||
Sbjct 121 CTTGACAAGAAGTCTGAGGGCGAGAAGAACGTTTTGATCTTCGACCTTGGTGGTGGTACT 180
Query 349799 TTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCTGGT 349858
|| ||||| || || | || |||| ||||| || || || || || || || ||||||
Sbjct 181 TTCGATGTCTCTCTTTTGACTATTGAGGAGGGTATCTTCGAGGTCAAGGCTACCGCTGGT 240
Query 349859 GATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTT 349900
|| || || |||||||| || || ||||| || || || |||
Sbjct 241 GACACTCACCTTGGTGGTGAGGACTTTGACAACCGACTTGTT 282
>seq68
Length=33655
Score = 96.9 bits (106), Expect = 1e-14
Identities = 185/271 (68%), Gaps = 4/271 (1%)
Strand=Plus/Plus
Query 349622 GTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCATTGCG 349681
|| || ||||| || || || | |||||| || || || || || || ||||||
Sbjct 14794 GTTCCTGCCTACTTCAACGACTCTCAGCGTCTCGCCACTAAGGACGCCGGTGCCATTGCC 14853
Query 349682 GGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATGGGCTT 349741
|| | | || || | || || || ||||| |||||||| || ||||| || || |||
Sbjct 14854 GGTCTTGAGGTGCTCCGTATTATCAACGAACCTACTGCTGCCGCTATTGCCTACGGTCTT 14913
Query 349742 GATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGTACTTTT 349801
|| | | || ||| | || ||| | || || || || || ||||||||||||||
Sbjct 14914 GACGAGAAGACTGAGGAGGAGCGAAACGTCCTCATCTTCGACTTGGGTGGTGGTACTTTC 14973
Query 349802 GATGTATCACTACTAACACTTGAAG--AGGGAATTTTTGAAGTTAAAGCAACTGCTGGTG 349859
||||| || || || || || | | | || | || || || || ||||||||||
Sbjct 14974 GATGTCTCTCTTCTTACCATTCAGGGCAAGG--TCTTCTCTGTCAAGGCCACTGCTGGTG 15031
Query 349860 ATACACATCTTGGTGGAGAAGATTTTGATAA 349890
| || ||||||||||| || || || || ||
Sbjct 15032 ACACTCATCTTGGTGGTGAGGACTTCGACAA 15062
>seq5
Length=47339
Score = 87.8 bits (96), Expect = 5e-12
Identities = 101/136 (74%), Gaps = 0/136 (0%)
Strand=Plus/Minus
Query 223710 CTGTATGTAATGCCTCATCTCTTGATATTAATTCATTTGAAAATGTTAATCCAGGCATTA 223769
||||||| | ||||||| || || || || ||||||||||| | ||||||||| |
Sbjct 13338 CTGTATGCATCCCCTCATCCCTGCTGATCAACTCGTTTGAAAATGTCAGTCCAGGCATCA 13279
Query 223770 AACCTCTCTTTTTCATCCAAAATATTGCGCAAAAAGCTCCTGaaaaaaaTATACCTTCTA 223829
| |||||||| || | ||| || ||||| ||||| || ||||| || || ||||| |
Sbjct 13278 ACCCTCTCTTCTTTAACCAGAAGATTGCAGCAAAAGACCCAGAAAAGAAAATGCCTTCCA 13219
Query 223830 CACAAGCAAACGCTAC 223845
| || ||||| || ||
Sbjct 13218 CGCATGCAAAAGCCAC 13203
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1515243003866361
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |