Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022221
55.1_202017-07-20] 587 sequences; 18,505,623 total letters
Query= NC_028108.1
Length=171454
Score E
Sequences producing significant alignments: (Bits) Value
seq185 228 9e-55
seq449 113 5e-20
seq5 86.0 7e-12
>seq185
Length=108970
Score = 228 bits (252), Expect = 9e-55
Identities = 801/1237 (65%), Gaps = 34/1237 (3%)
Strand=Plus/Plus
Query 19217 CTTTTCAACGCCGGTACGAACAACCCGCAGATGTCGAGCTGTTTCCTAGTGGCTATGAAG 19276
||||||||||||||||| | || || ||||| || ||||| ||||| ||||||
Sbjct 94567 CTTTTCAACGCCGGTACTCCCCGACCCCAAATGTCATCATGCTTCCTCGTGGCCATGAAG 94626
Query 19277 GATGACAGCATTGAGGGCATCTACGAGACGCTCAAGGAGTGCGCGCACATCTCCAAGTGG 19336
|||||| |||||| || |||||||| || |||||| || || || |||||||||
Sbjct 94627 GATGACTCCATTGATGGTATCTACGATACTCTCAAGACCTGTGCTCAGATCTCCAAGACT 94686
Query 19337 TCCGGGGGTATCGGGATCCAC-TGCTCGAATATCCGGTCGAGTGGTACACGAATCAATGG 19395
|||| ||||| || | ||| | | | |||||||| ||| || | || ||
Sbjct 94687 GCCGGTGGTATTGGTCTTCACATTCAC-AATATCCGTGCGAAGGGCTCCTACATTGCCGG 94745
Query 19396 GACGAACGGAGTAGCCGACGGTATCGTCCCAATGCTCCGCGTCTTCAACAACACGGCCAG 19455
|| || || || |||| ||| | || |||||||| | | | || ||| || |
Sbjct 94746 TACCAATGGTTACTCCAACGGCATCATTCCTATGCTCCGAGCTTACGACGCCACAGCTCG 94805
Query 19456 GTACGTCAACCAGGGGGGCGGCAAACGCAAGGGCTCGTTCGCCATCTACCTCGAGCCATG 19515
||||| | || || || ||| || || | ||||||||||| || ||||| ||
Sbjct 94806 ATACGTTGATCAAGGTGGTAACAAGCGTCCTGGTGCCTTCGCCATCTATCTTGAGCCTTG 94865
Query 19516 GCACGCGGACGTCATGGATTTCCTCGAACTGCGCCTGAACCAGGGTGACGAGGAGATGCG 19575
|||||| || || | || ||| | || | | |||||| ||| | |||||| | ||
Sbjct 94866 GCACGCTGATGTATTTGACTTCATTGACTTAAGGAAGAACCATGGTAAGGAGGAGGTACG 94925
Query 19576 CTGTCGCGACCTCTTCACGGCCTTGTGGATTCCGGACCTATTCATGGAGAAGGTTGAGAA 19635
||| || || ||| ||| | ||||| | || || |||||| || || ||
Sbjct 94926 AGCTCGTGATCTTTTCTACGCCCTCTGGATCTCCGATCTTTTCATGAAGCGTGTCGAATC 94985
Query 19636 GGACGAAGAATGGCACCTGATGTG-CCCGCACGAATGCCCTGGCCTACCCGACGTCTACG 19694
|| | || ||| || ||||| ||||| ||| |||||||| || ||||||| ||||
Sbjct 94986 CGATGGGGATTGGACTCTTATGTGTCCCGC-CGAGTGCCCTGGACTTGCCGACGTTTACG 95044
Query 19695 GCGAGGCGTTCAATGAGTTGTACCGGACTTACGTAGCCCAGGGCCGGTTCAAGAAGGTGG 19754
| || | || | || | || || |||| |||||| | | |||
Sbjct 95045 GTGAAGAATTTGAAAAGCTTTATGAGAGCTACGAGAGGCAGGGCAAGGGAAGGAAAACTA 95104
Query 19755 TCCGGGCCCGGGACGTCTGGGACCGCGTCCTCAAAAGCCAGGTCGAGACCGGCACACCGT 19814
|| |||| | | | ||| | | ||||| | || |||||| || || |
Sbjct 95105 TCAAAGCCCAGAAGCTTTGGTTCGCCATCCTCGAGGCTCAAACCGAGACTGGTGTCCCTT 95164
Query 19815 ACATGTGCTACAAGGACGCCGCGAACGCCAAGTCAAATCAGAAGAACATCGGCGCGATCA 19874
|||| ||||||||||| || || ||| ||||||| || || ||| || | || | ||||
Sbjct 95165 ACATCTGCTACAAGGATGCTGCCAACTCCAAGTCCAACCAAAAGCACCTTGGTACCATCA 95224
Query 19875 AGTCGTCCAACCTGTGTACTGAAATCATGGAGGTTTCCAAGCCGGACGAGACTGCCGTGT 19934
| || ||||| |||||||||||||||||| ||| || || || ||| || |
Sbjct 95225 AATCCAGTAACCTCTGTACTGAAATCATGGAGTATTCTTCTCCTGATGAAGTTGCTGTCT 95284
Query 19935 GTAATCTGGCGTCCCTGTGC-CTGCCGACTTTCGTCAAGGCCT----CCTC----CTTCG 19985
||||||| || || || ||| || || | ||||| || ||| | || || |
Sbjct 95285 GTAATCTTGCTTCTCT-TGCTCTTCCTGCCTTCGT--AGACCTTGAACGTCGCGTCTATG 95341
Query 19986 ACTTTGCCAAATTGTACGAGGTGACCCGGGTCGTCACGCGTAATCTGAATCGCGTCATCG 20045
|||| || || ||||| | ||| ||| || || || || | || |||
Sbjct 95342 ACTTCAAAAAGCTGCACGAGATTACCAAGGTTGTTACAAAGAACCTTGACACTGTAATCA 95401
Query 20046 ATCGGAACTTTTACCC---GACCGAGGCGGCGCGCAAGTCGAATATGCGCCACCGGCCGA 20102
|| |||| || || | | || ||| ||||| || || |||||||| || ||
Sbjct 95402 CCCGTAACTACTATCCAGTGCCTGA---GGCCCGCAACTCCAACATGCGCCATCGACCTG 95458
Query 20103 TCGCGATCGGCGTCCAGGGCCTGGCCGACGTTTTCATGATGCTCGGCCTCTCATTCGACG 20162
| | | || |||||||| || ||||||| ||||||| || || | | ||||||
Sbjct 95459 TTGGTCTTGGTGTCCAGGGTCTTGCCGACGCTTTCATGGCCCTTCGCATGCCGTTCGACT 95518
Query 20163 ATCCCAAGGCGCGCGAGCTCAACAAGGGCATCTTCGAGGCCGTGTACCACGCGGCCCTCC 20222
| |||| | || ||||| | ||||||||| | | ||||||||||| ||
Sbjct 95519 CCGCTGAGGCTAGGGAACTCAATATCCAGATCTTCGAGACGATATACCACGCGGCACTTG 95578
Query 20223 TGGAATCGTGCGAACTCGCCAAAGAGGACGGCCCGTACGAGACGTTCAAGGGGTCGCCCG 20282
|| ||||||||||| ||| | ||| || | || || | | | | || || |||
Sbjct 95579 AGGCGTCGTGCGAACTTGCCGAGGAGTTTGGTACCTATGAATCTTACGAAGGTTCTCCCA 95638
Query 20283 CGTCCGAGGGTATCCTCCAGCCGGACATGTGGGG-CGT-----CACTGAGAATGAGTTTT 20336
|| |||||||||| ||| ||||||||||| ||| ||| || | | |
Sbjct 95639 TCTCTAAGGGTATCCTTCAGTACGACATGTGGGGCCGTGTTCCCACCGACCTTTGGGACT 95698
Query 20337 GGAGCGCCCTCAAGGTTGAGATC---AAGACCCACGGGCTTCGCAACTCGTTGCTCGTCG 20393
||| | || |||| ||||| ||| |||| | | ||||| ||||||||||
Sbjct 95699 GGACAGAGCTGAAGGCCAAGATCGCACAGA---ACGGTGTGAGGAACTCTTTGCTCGTCG 95755
Query 20394 CGCCCATGCCGACCGCCTCGACCGCCCAGATCATGGG 20430
| || ||||| || ||||| || | || ||| ||||
Sbjct 95756 CCCCTATGCCTACTGCCTCAACGTCTCAAATCTTGGG 95792
Score = 201 bits (222), Expect = 1e-46
Identities = 790/1232 (64%), Gaps = 24/1232 (2%)
Strand=Plus/Minus
Query 78574 CCCATGATCTGGGCGGTCGAGGCGGTCGGCATGGGTGCGACCAGTAGAGAATTCCGAAGA 78633
|||| ||| || | || ||||| || ||||| || ||||| || | ||| |||| | |
Sbjct 95792 CCCAAGATTTGAGACGTTGAGGCAGTAGGCATAGGGGCGACGAGCAAAGAGTTCCTCACA 95733
Query 78634 CCATGCGTCTTGATCTCGACCTTTAGGCC------GTCCCAAAATTCATTCGCCGCGATC 78687
|| | | ||||| | |||| || | |||||||| || | | |
Sbjct 95732 CCGTTCTGTGCGATCTTGGCCTTCAGCTCTGTCCAGTCCCAAAGGTCGGTGGGAACACGG 95673
Query 78688 CCCCACATGTCCGGTTGAAGGATACCCTCGGACGCCGGCGACCCCTTGAACGTCTCGTAA 78747
||||||||||| ||||||||||||| || || || || | | | | || ||
Sbjct 95672 CCCCACATGTCGTACTGAAGGATACCCTTAGAGATGGGAGAACCTTCGTAAGATTCATAG 95613
Query 78748 GATCCCTCCTCCTTGGCGAGTTCGCATGACTCGAGCAGGGCCGCGTGGTACACAGCCTCG 78807
| || ||||| ||| |||||||| ||| | || ||||||||||| | | ||||
Sbjct 95612 GTACCAAACTCCTCGGCAAGTTCGCACGACGCCTCAAGTGCCGCGTGGTATATCGTCTCG 95553
Query 78808 AAGATGCCCTTGTTGAGCTCGCGCGCCTTGGTCTCGTCGAACGAAAGGCCGAGCATCATG 78867
||||| | ||||| || | |||| | |||||||| | || || ||||
Sbjct 95552 AAGATCTGGATATTGAGTTCCCTAGCCTCAGCGGAGTCGAACGGCATGCGAAGGGCCATG 95493
Query 78868 AAGACATCGGCCAGGCCCTGGACGCCGATAGCGATCGGTCGGTGGCGCATGTTGCTCTTT 78927
|| | ||||| || |||||||| || | | | | ||||| |||||||||||| ||
Sbjct 95492 AAAGCGTCGGCAAGACCCTGGACACCAAGACCAACAGGTCGATGGCGCATGTTGGAGTTG 95433
Query 78928 CGGGCCGCCTCGGTC---GGGTAAAAGTTCCGATCGATGACGCGGTTCAGGTTACGCGTG 78984
|||||| || | | || || |||| || ||| || || ||||| ||
Sbjct 95432 CGGGCC---TCAGGCACTGGATAGTAGTTACGGGTGATTACAGTGTCAAGGTTCTTTGTA 95376
Query 78985 ACGACCCGAGTCACCTCGTACAATTTGGCGAAATCAAAAT---GATTTCCTTTG---ATG 79038
|| ||| || | ||||| || || ||| ||| | || | | | | |
Sbjct 95375 ACAACCTTGGTAATCTCGTGCAGCTTTTTGAAGTCATAGACGCGACGTTCAAGGTCTACG 95316
Query 79039 AAAGTCGGTAG-GCACAGCGATGCCAGGTTGCACACGGCCGTCTCGTCCGGGCTAGAAAC 79097
|| | || || ||| || || || || || || || || || || || ||||
Sbjct 95315 AAGGCAGGAAGAGCA-AGAGAAGCAAGATTACAGACAGCAACTTCATCAGGAGAAGAATA 95257
Query 79098 CTCGATGATTTCTGTGCACAAATTAGACGACTTGATGGTGCCGATGTTCTTCTGGTTGCT 79157
||| |||||||| || || | ||| || |||||||| || | || ||| ||||||
Sbjct 95256 CTCCATGATTTCAGTACAGAGGTTACTGGATTTGATGGTACCAAGGTGCTTTTGGTTGGA 95197
Query 79158 CTTCTCGTTACAGGCGTCCTTGTAGCACATGTACGGCGTCCCGGTCTCAACCTGACTCTT 79217
||| ||| || ||||||||||| ||||| || || ||||| ||| ||
Sbjct 95196 CTTGGAGTTGGCAGCATCCTTGTAGCAGATGTAAGGGACACCAGTCTCGGTTTGAGCCTC 95137
Query 79218 GAGAACGCCGTCCCAGATGTCCCGGGCCCGGACAACCTTCTTGTACCGACCCTGTGCGAC 79277
||| | | || ||| | | | |||| || | ||| | | ||||| |
Sbjct 95136 GAGGATGGCGAACCAAAGCTTCTGGGCTTTGATAGTTTTCCTTCCCTTGCCCTGCCTCTC 95077
Query 79278 GTACGTCCGGTACAACTCGTTGAAAGCCTCCCCATAGACATCGGGCAGGCCCGGGCACTC 79337
||| || || | || | || | || || || || |||| || || ||||||||
Sbjct 95076 GTAGCTCTCATAAAGCTTTTCAAATTCTTCACCGTAAACGTCGGCAAGTCCAGGGCACTC 95017
Query 79338 GTGCGGG-CACATCAGGTGCCAGTCCTCGTCCTTCTCAACCTTCTCCATGAAGAGGTCCG 79396
| ||||| ||||| || ||| ||| | || || || || |||||| || || |
Sbjct 95016 G-GCGGGACACATAAGAGTCCAATCCCCATCGGATTCGACACGCTTCATGAAAAGATCGG 94958
Query 79397 GGATCCACAGGGCCGTGAAGAGGTCGCGGCAACGCATCTCCTCGTCGCCCTGGTTCAGAC 79456
|||||| ||||| ||| || || || || | |||||| | || |||||| |
Sbjct 94957 AGATCCAGAGGGCGTAGAAAAGATCACGAGCTCGTACCTCCTCCTTACCATGGTTCTTCC 94898
Query 79457 GCAGCTCGAGAAAGTCCATGATGTCGGCGTGCCACGGCTCCAGATAGATGGCGAACGAAC 79516
| || | ||||| | | || |||||||| ||||| |||||||||||||| | ||
Sbjct 94897 TTAAGTCAATGAAGTCAAATACATCAGCGTGCCAAGGCTCAAGATAGATGGCGAAGGCAC 94838
Query 79517 CCTTGCGCTTGCCGCCGCCCTGGTTGACGTACCGGGCCGTGTTGTTGAAAACTCGGAGCA 79576
| |||||| || || || | ||||| || || ||| || | || |||||||||
Sbjct 94837 CAGGACGCTTGTTACCACCTTGATCAACGTATCGAGCTGTGGCGTCGTAAGCTCGGAGCA 94778
Query 79577 TGGGCACGATGCCGTCGGCGACGCCGTTCGTCCCGTTGATTCGTGTACCGCTCGCCCGAA 79636
| || | |||||||| || | || || || ||| || | || |||| || |
Sbjct 94777 TAGGAATGATGCCGTTGGAGTAACCATTGGTACCGGCAATGTAGGAGCCCTTCGCACGGA 94718
Query 79637 TGTTCGAGCA-GTGGATTCCGATGCCCCCGGACCACTTGGAGATGTGCGCGCACTCCTTG 79695
| || | | | ||| | || || || |||| ||||||||| || || || ||||
Sbjct 94717 TATT-GTGAATGTGAAGACCAATACCACCGGCAGTCTTGGAGATCTGAGCACAGGTCTTG 94659
Query 79696 AGCGTCTCGTAGATGCCCTCGATCGAGTCGTCCTTCATAGCGACCAGGAAGCAGCTCGAC 79755
|| || |||||||| || || || ||||| |||||||| || || |||||||| |||
Sbjct 94658 AGAGTATCGTAGATACCATCAATGGAGTCATCCTTCATGGCCACGAGGAAGCATGATGAC 94599
Query 79756 ATCTGTGGGTTGTTCGTACCGGCGTTGAAGAG 79787
|| || || | |||||||||||||| ||
Sbjct 94598 ATTTGGGGTCGGGGAGTACCGGCGTTGAAAAG 94567
>seq449
Length=79778
Score = 113 bits (124), Expect = 5e-20
Identities = 107/137 (78%), Gaps = 0/137 (0%)
Strand=Plus/Minus
Query 59982 CGTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATT 60041
|| ||||| |||||||| |||||| || |||||||||||||| || ||| | ||
Sbjct 63700 CGACTCATTGCTTTTGCTGCCGTGGAGGGTATCTTCTTCTCTGGTTCTTTCGCGTCCATC 63641
Query 60042 TTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCC 60101
|||||||| || ||||| || |||||||| || || | ||||| |||||||| || ||
Sbjct 63640 TTCTGGCTTAAGAAGCGAGGTCTCATGCCTGGTCTCACCTTCTCTAACGAGCTCATCTCT 63581
Query 60102 CGGGACGAGGGCCTCCA 60118
|| |||||||| |||||
Sbjct 63580 CGAGACGAGGGTCTCCA 63564
>seq5
Length=47339
Score = 86.0 bits (94), Expect = 7e-12
Identities = 104/139 (75%), Gaps = 2/139 (1%)
Strand=Plus/Plus
Query 59991 GCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCTC 60050
|||||||||||||||||||| || ||||| ||||| || || ||| || |||||| |
Sbjct 13206 GCTTTTGCATGCGTGGAAGGCATTTTCTTTTCTGGGTCTTTTGCTGCAATCTTCTGGTTA 13265
Query 60051 AAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGAG 60110
|| ||| | || | ||||| || |||| || || |||||| |||| | |||| |||
Sbjct 13266 AAGAAGAGAGGGTTGATGCCTGGACTGACATTTTCAAACGAGTTGATCAGCAGGGATGAG 13325
Query 60111 GGCCTCCAT-CAG-GAGTT 60127
|| | ||| ||| |||||
Sbjct 13326 GGGATGCATACAGTGAGTT 13344
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 548520775199280
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