Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022221
55.1_202017-07-20] 587 sequences; 18,505,623 total letters
Query= NC_028112.1
Length=178262
Score E
Sequences producing significant alignments: (Bits) Value
seq449 185 1e-41
seq185 172 6e-38
seq5 100 3e-16
seq90 95.1 1e-14
>seq449
Length=79778
Score = 185 bits (204), Expect = 1e-41
Identities = 177/227 (78%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| |||||||||||||| | ||||| |||||||| |||||||| || ||||| |
Sbjct 78274 ATGCAGATCTTTGTCAAGACTTTGACCGGAAAGACTATCACTCTTGAAGTCGAGTCGTCT 78333
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|| | || | || | ||||| || |||||||||||||| || |||||||| || |||
Sbjct 78334 GACACTATCGACAACGTTAAGGCGAAGATTCAGGACAAGGAAGGTATTCCTCCTGATCAG 78393
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
|| || | |||||||||||||| ||||| ||||||| |||||| || | ||||| ||
Sbjct 78394 CAACGATTGATTTTTGCTGGTAAACAACTGGAGGATGGTCGTACTCTTTCCGACTACAAC 78453
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
|||||||||| || || ||||| || || | ||||| || |||||
Sbjct 78454 ATCCAAAAGGAGTCTACCCTTCACCTTGTTCTCCGTCTGCGTGGTGG 78500
Score = 152 bits (168), Expect = 6e-32
Identities = 170/227 (75%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||||||||| ||||| || || |||||||| || ||||| ||||| || || |
Sbjct 77767 ATGCAAATCTTCGTCAAAACCCTCACCGGCAAAACCATTACCCTTGAAGTCGAAAGCTCT 77826
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|||| ||| | ||| | ||||| || || || ||||||||||| || || || || |||
Sbjct 77827 GATACCATCGACAATGTCAAGGCCAAGATCCAAGACAAGGAGGGTATCCCCCCTGATCAG 77886
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
|| || || || || || || || ||||| || |||| || || || | || || |||
Sbjct 77887 CAACGACTCATCTTCGCCGGAAAACAACTTGAAGATGGCCGAACTCTTTCCGATTACAAT 77946
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
|||||||||| || || || ||||| ||||||||||| || |||||
Sbjct 77947 ATCCAAAAGGAGTCTACCCTCCATCTCGTCTTGCGTCTCCGAGGTGG 77993
Score = 143 bits (158), Expect = 3e-29
Identities = 130/164 (79%), Gaps = 0/164 (0%)
Strand=Plus/Plus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| || || |||||||| |||||||| |||||||| |||||||||||||| || |
Sbjct 77995 ATGCAGATTTTCGTCAAGACTCTTACCGGAAAGACTATCACTCTTGAGGTTGAATCCTCT 78054
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|| | ||||| ||| | ||||| || ||||||||||||||||| || ||||| |||||
Sbjct 78055 GACACCATTGACAATGTCAAGGCGAAGATTCAGGACAAGGAGGGTATCCCTCCTGACCAA 78114
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTAC 27569
|| || | || || || || |||||||| || |||| ||| ||
Sbjct 78115 CAACGATTGATCTTCGCCGGAAAGCAACTGGAAGATGGTCGAAC 78158
Score = 132 bits (146), Expect = 5e-26
Identities = 153/206 (74%), Gaps = 0/206 (0%)
Strand=Plus/Plus
Query 27427 CTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAG 27486
||||| || ||||| || |||||||| || || || | |||| ||| | || | |||
Sbjct 78576 CTTACGGGTAAGACAATCACTCTTGAAGTCGAATCGAGCGATACCATCGACAACGTCAAG 78635
Query 27487 GCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGT 27546
|| || || || ||||||||||| || || || || ||||| || || || || || ||
Sbjct 78636 GCCAAGATCCAAGACAAGGAGGGTATCCCCCCTGATCAGCAACGACTCATCTTCGCCGGA 78695
Query 27547 AAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTT 27606
|| ||||| || |||| || || || | || || ||| |||||||||| || || ||
Sbjct 78696 AAACAACTTGAAGATGGCCGAACTCTTTCCGATTACAATATCCAAAAGGAGTCTACCCTC 78755
Query 27607 CATCTAGTCTTGCGTCTTCGCGGTGG 27632
||||| ||||||||||| || |||||
Sbjct 78756 CATCTCGTCTTGCGTCTCCGAGGTGG 78781
Score = 131 bits (144), Expect = 2e-25
Identities = 123/157 (78%), Gaps = 0/157 (0%)
Strand=Plus/Plus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
|||||||| || |||||||| || ||||| |||||||| |||||||| || |||||
Sbjct 77488 ATGCAAATTTTCGTCAAGACTCTCACCGGTAAGACTATCACTCTTGAAGTGGAGTCTTCC 77547
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|| | ||| | ||| | ||||| || || || ||||||||||| || ||||| ||||||
Sbjct 77548 GACACCATCGACAATGTCAAGGCCAAGATCCAAGACAAGGAGGGTATCCCTCCTGACCAG 77607
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATG 27562
|| || | || |||||||||||||| || || ||||
Sbjct 77608 CAACGATTGATCTTTGCTGGTAAGCAGCTTGAAGATG 77644
>seq185
Length=108970
Score = 172 bits (190), Expect = 6e-38
Identities = 656/1015 (65%), Gaps = 25/1015 (2%)
Strand=Plus/Minus
Query 80539 CCCCACATGTCGTGCTGCAAGATGCCCTCCGACGCCGGAGACCCCGCGAACGTCTCGTAC 80598
||||||||||||| ||| | ||| |||| || ||||| || || | | || ||
Sbjct 95672 CCCCACATGTCGTACTGAAGGATACCCTTAGAGATGGGAGAACCTTCGTAAGATTCATAG 95613
Query 80599 GGGCCCTCCGTCTTGGCCAGCTCACACGACTCCATAAGGGCCGCGTGATAAATGCACTCA 80658
| || | || ||| || || |||||| || ||| |||||||| || || |||
Sbjct 95612 GTACCAAACTCCTCGGCAAGTTCGCACGACGCCTCAAGTGCCGCGTGGTATATCGTCTCG 95553
Query 80659 AAGACGCCCTTGTTCACACCGCGCGCCTGTGGGTCGTCGAACGACAAGCCCATCATCATG 80718
|||| | || | | | |||| | | |||||||| || || | ||||
Sbjct 95552 AAGATCTGGATATTGAGTTCCCTAGCCTCAGCGGAGTCGAACGGCATGCGAAGGGCCATG 95493
Query 80719 AACACGTCAGCCAGGCCCTGAACGCCGATGGCGATCGGGCGGTGGCGCTTGTTCGA-TCG 80777
|| |||| || || ||||| || || | | | || || |||||| |||| || | |
Sbjct 95492 AAAGCGTCGGCAAGACCCTGGACACCAAGACCAACAGGTCGATGGCGCATGTTGGAGTTG 95433
Query 80778 CTCGGCCTCCGGAATTGGGTAAAAGTTATTATCGATGACGCGGTTCAGGTTGCGTGTAAC 80837
| |||||| || | ||| || ||||| ||| || || ||||| ||||||
Sbjct 95432 CG-GGCCTCAGGCACTGGATAGTAGTTACGGGTGATTACAGTGTCAAGGTTCTTTGTAAC 95374
Query 80838 AACCCGTGTAACATCATGAAGTTTCTGAAAGTC---GAATTG--GTTCCCCTTC-ACAAA 80891
|||| |||| || || || || | ||||| || | |||| || || ||
Sbjct 95373 AACCTTGGTAATCTCGTGCAGCTTTTTGAAGTCATAGACGCGACGTTCAAGGTCTACGAA 95314
Query 80892 TGCCGGAAGGCTCAGGGACGCCAGATTGCACACGGCCACCTCTTCAGCATCTGTAAACTC 80951
|| ||||| || || || ||||| || || || || || |||| | | | ||||
Sbjct 95313 GGCAGGAAGAGCAAGAGAAGCAAGATTACAGACAGCAACTTCATCAGGAGAAGAATACTC 95254
Query 80952 GACGATTTCCGTGCACAAATTAGAAGACTTAATTGTACCCAGGTTTTTCTGGTTTGACTT 81011
| |||||| || || | ||| || || || ||||| |||| || ||||| |||||
Sbjct 95253 CATGATTTCAGTACAGAGGTTACTGGATTTGATGGTACCAAGGTGCTTTTGGTTGGACTT 95194
Query 81012 GGCGTTGCAAGCGTCCTTGTAGCACATGTACGGGGTACCGGTCTCGACCTGTGACTTGAG 81071
|| |||| ||| ||||||||||| ||||| ||| ||| |||||| || | || |||
Sbjct 95193 GGAGTTGGCAGCATCCTTGTAGCAGATGTAAGGGACACCAGTCTCGGTTTGAGCCTCGAG 95134
Query 81072 GATGGCGTCCCAAATCTCGCGCGCCTTGACCACCTTGCGGAATTTGCCTTCGGCCACATA 81131
||||||| ||||| || | || |||| || | ||||| | | | ||
Sbjct 95133 GATGGCGAACCAAAGCTTCTGGGCTTTGATAGTTTTCCTTCCCTTGCCCTGCCTCTCGTA 95074
Query 81132 CTTGGCGT-AAGCTTCGTCGAACTTGGCACCGTGAAGTTCAGTGAGGTCTGGGCACTCGT 81190
| | | |||||| || || | |||||| || || | || | |||||||||
Sbjct 95073 GCTCTCATAAAGCTT-TTCAAATTCTTCACCGTAAACGTCGGCAAGTCCAGGGCACTCGG 95015
Query 81191 TAGGGCACATCAGGTGCCAGTCGGTGTCGTTCTCTACAGCCTTCATGAAAGCGTCAGGGA 81250
|| ||||| || ||| || ||| || ||| |||||||||| || | ||
Sbjct 95014 CGGGACACATAAGAGTCCAATCCCCATCGGATTCGACACGCTTCATGAAAAGATCGGAGA 94955
Query 81251 TCCAGAGGGCGGTGAACAGGTCGCGGCAGCGCG--CCTCCTCATCACCCTGGTTGAGGCG 81308
||||||||||| ||| || || || ||| || ||||||| | ||| ||||| |
Sbjct 94954 TCCAGAGGGCGTAGAAAAGATCACG--AGCTCGTACCTCCTCCTTACCATGGTTCTTCCT 94897
Query 81309 CAACTCGAGAAAGTCCATGATGTCCGCATGCCATGGCTCCAGATACACGGCGATCG-AC- 81366
|| || | ||||| | | || || ||||| ||||| ||||| | ||||| | ||
Sbjct 94896 TAAGTCAATGAAGTCAAATACATCAGCGTGCCAAGGCTCAAGATAGATGGCGAAGGCACC 94837
Query 81367 ----CCCTTGCGACGGCCACCCTGGTTGACGTAACGGGCAGTCGCGTTAAATACACGCAA 81422
| |||| | ||||| || | ||||| || || || |||| | | || |
Sbjct 94836 AGGACGCTTGTTA---CCACCTTGATCAACGTATCGAGCTGTGGCGTCGTAAGCTCGGAG 94780
Query 81423 CATAGGGATGATACCATCTGACTGACCGTTCGTACCCACGATACGCGACCCCTTGGCGCG 81482
|||||| ||||| || | || | ||| || ||||| | || || ||||| || ||
Sbjct 94779 CATAGGAATGATGCCGTTGGAGTAACCATTGGTACCGGCAATGTAGGAGCCCTTCGCACG 94720
Query 81483 CACCTTGCTGATTG-AAAGACCGATGCCACCTGACCACTTTGAAATCTGAGCACA 81536
| ||| ||| || |||||| || ||||| | ||| || |||||||||||
Sbjct 94719 GATATTG-TGAATGTGAAGACCAATACCACCGGCAGTCTTGGAGATCTGAGCACA 94666
>seq5
Length=47339
Score = 100 bits (110), Expect = 3e-16
Identities = 96/123 (78%), Gaps = 0/123 (0%)
Strand=Plus/Plus
Query 64726 GCTTTTGCCTGTGTGGAAGGAATTTTCTTTTCTGGGTCATTCTGTTCTATTTTCTGGCTA 64785
|||||||| || |||||||| ||||||||||||||||| || | | || |||||| ||
Sbjct 13206 GCTTTTGCATGCGTGGAAGGCATTTTCTTTTCTGGGTCTTTTGCTGCAATCTTCTGGTTA 13265
Query 64786 AAAAAGCGGGGCCTGATGCCAGGTCTGTCGTTTTCGAACGAGCTGATCTCTCGGGACGAG 64845
|| ||| | || ||||||| || ||| | ||||| |||||| ||||| |||| |||
Sbjct 13266 AAGAAGAGAGGGTTGATGCCTGGACTGACATTTTCAAACGAGTTGATCAGCAGGGATGAG 13325
Query 64846 GGG 64848
|||
Sbjct 13326 GGG 13328
>seq90
Length=80925
Score = 95.1 bits (104), Expect = 1e-14
Identities = 114/155 (74%), Gaps = 0/155 (0%)
Strand=Plus/Minus
Query 27427 CTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAG 27486
|||||||| ||||| || || || ||||| ||||| || | ||| | ||| | |||
Sbjct 51623 CTTACCGGAAAGACCATCACCCTCGAGGTCGAGTCCTCCGACACCATCGACAATGTCAAG 51564
Query 27487 GCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGT 27546
| || || |||||||||||||| || || || ||||||||||| | || || || ||
Sbjct 51563 TCCAAGATCCAGGACAAGGAGGGTATCCCCCCTGACCAGCAGCGATTGATCTTCGCCGGA 51504
Query 27547 AAGCAACTCGAGGATGATCGTACCCTAGCAGACTA 27581
||||| |||||||| | | ||||| | |||||
Sbjct 51503 AAGCAGCTCGAGGACGGCAGGACCCTTTCTGACTA 51469
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 570306215347440
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