Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022221 55.1_202017-07-20] 587 sequences; 18,505,623 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq449 185 1e-41 seq185 172 6e-38 seq5 100 3e-16 seq90 95.1 1e-14 >seq449 Length=79778 Score = 185 bits (204), Expect = 1e-41 Identities = 177/227 (78%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||||||||| | ||||| |||||||| |||||||| || ||||| | Sbjct 78274 ATGCAGATCTTTGTCAAGACTTTGACCGGAAAGACTATCACTCTTGAAGTCGAGTCGTCT 78333 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | || | ||||| || |||||||||||||| || |||||||| || ||| Sbjct 78334 GACACTATCGACAACGTTAAGGCGAAGATTCAGGACAAGGAAGGTATTCCTCCTGATCAG 78393 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || || | |||||||||||||| ||||| ||||||| |||||| || | ||||| || Sbjct 78394 CAACGATTGATTTTTGCTGGTAAACAACTGGAGGATGGTCGTACTCTTTCCGACTACAAC 78453 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||||||||| || || ||||| || || | ||||| || ||||| Sbjct 78454 ATCCAAAAGGAGTCTACCCTTCACCTTGTTCTCCGTCTGCGTGGTGG 78500 Score = 152 bits (168), Expect = 6e-32 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||||||||| ||||| || || |||||||| || ||||| ||||| || || | Sbjct 77767 ATGCAAATCTTCGTCAAAACCCTCACCGGCAAAACCATTACCCTTGAAGTCGAAAGCTCT 77826 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| ||| | ||| | ||||| || || || ||||||||||| || || || || ||| Sbjct 77827 GATACCATCGACAATGTCAAGGCCAAGATCCAAGACAAGGAGGGTATCCCCCCTGATCAG 77886 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || || || || || || || || ||||| || |||| || || || | || || ||| Sbjct 77887 CAACGACTCATCTTCGCCGGAAAACAACTTGAAGATGGCCGAACTCTTTCCGATTACAAT 77946 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||||||||| || || || ||||| ||||||||||| || ||||| Sbjct 77947 ATCCAAAAGGAGTCTACCCTCCATCTCGTCTTGCGTCTCCGAGGTGG 77993 Score = 143 bits (158), Expect = 3e-29 Identities = 130/164 (79%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || || |||||||| |||||||| |||||||| |||||||||||||| || | Sbjct 77995 ATGCAGATTTTCGTCAAGACTCTTACCGGAAAGACTATCACTCTTGAGGTTGAATCCTCT 78054 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| ||| | ||||| || ||||||||||||||||| || ||||| ||||| Sbjct 78055 GACACCATTGACAATGTCAAGGCGAAGATTCAGGACAAGGAGGGTATCCCTCCTGACCAA 78114 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTAC 27569 || || | || || || || |||||||| || |||| ||| || Sbjct 78115 CAACGATTGATCTTCGCCGGAAAGCAACTGGAAGATGGTCGAAC 78158 Score = 132 bits (146), Expect = 5e-26 Identities = 153/206 (74%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 27427 CTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAG 27486 ||||| || ||||| || |||||||| || || || | |||| ||| | || | ||| Sbjct 78576 CTTACGGGTAAGACAATCACTCTTGAAGTCGAATCGAGCGATACCATCGACAACGTCAAG 78635 Query 27487 GCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGT 27546 || || || || ||||||||||| || || || || ||||| || || || || || || Sbjct 78636 GCCAAGATCCAAGACAAGGAGGGTATCCCCCCTGATCAGCAACGACTCATCTTCGCCGGA 78695 Query 27547 AAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTT 27606 || ||||| || |||| || || || | || || ||| |||||||||| || || || Sbjct 78696 AAACAACTTGAAGATGGCCGAACTCTTTCCGATTACAATATCCAAAAGGAGTCTACCCTC 78755 Query 27607 CATCTAGTCTTGCGTCTTCGCGGTGG 27632 ||||| ||||||||||| || ||||| Sbjct 78756 CATCTCGTCTTGCGTCTCCGAGGTGG 78781 Score = 131 bits (144), Expect = 2e-25 Identities = 123/157 (78%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||| || |||||||| || ||||| |||||||| |||||||| || ||||| Sbjct 77488 ATGCAAATTTTCGTCAAGACTCTCACCGGTAAGACTATCACTCTTGAAGTGGAGTCTTCC 77547 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | ||| | ||||| || || || ||||||||||| || ||||| |||||| Sbjct 77548 GACACCATCGACAATGTCAAGGCCAAGATCCAAGACAAGGAGGGTATCCCTCCTGACCAG 77607 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATG 27562 || || | || |||||||||||||| || || |||| Sbjct 77608 CAACGATTGATCTTTGCTGGTAAGCAGCTTGAAGATG 77644 >seq185 Length=108970 Score = 172 bits (190), Expect = 6e-38 Identities = 656/1015 (65%), Gaps = 25/1015 (2%) Strand=Plus/Minus Query 80539 CCCCACATGTCGTGCTGCAAGATGCCCTCCGACGCCGGAGACCCCGCGAACGTCTCGTAC 80598 ||||||||||||| ||| | ||| |||| || ||||| || || | | || || Sbjct 95672 CCCCACATGTCGTACTGAAGGATACCCTTAGAGATGGGAGAACCTTCGTAAGATTCATAG 95613 Query 80599 GGGCCCTCCGTCTTGGCCAGCTCACACGACTCCATAAGGGCCGCGTGATAAATGCACTCA 80658 | || | || ||| || || |||||| || ||| |||||||| || || ||| Sbjct 95612 GTACCAAACTCCTCGGCAAGTTCGCACGACGCCTCAAGTGCCGCGTGGTATATCGTCTCG 95553 Query 80659 AAGACGCCCTTGTTCACACCGCGCGCCTGTGGGTCGTCGAACGACAAGCCCATCATCATG 80718 |||| | || | | | |||| | | |||||||| || || | |||| Sbjct 95552 AAGATCTGGATATTGAGTTCCCTAGCCTCAGCGGAGTCGAACGGCATGCGAAGGGCCATG 95493 Query 80719 AACACGTCAGCCAGGCCCTGAACGCCGATGGCGATCGGGCGGTGGCGCTTGTTCGA-TCG 80777 || |||| || || ||||| || || | | | || || |||||| |||| || | | Sbjct 95492 AAAGCGTCGGCAAGACCCTGGACACCAAGACCAACAGGTCGATGGCGCATGTTGGAGTTG 95433 Query 80778 CTCGGCCTCCGGAATTGGGTAAAAGTTATTATCGATGACGCGGTTCAGGTTGCGTGTAAC 80837 | |||||| || | ||| || ||||| ||| || || ||||| |||||| Sbjct 95432 CG-GGCCTCAGGCACTGGATAGTAGTTACGGGTGATTACAGTGTCAAGGTTCTTTGTAAC 95374 Query 80838 AACCCGTGTAACATCATGAAGTTTCTGAAAGTC---GAATTG--GTTCCCCTTC-ACAAA 80891 |||| |||| || || || || | ||||| || | |||| || || || Sbjct 95373 AACCTTGGTAATCTCGTGCAGCTTTTTGAAGTCATAGACGCGACGTTCAAGGTCTACGAA 95314 Query 80892 TGCCGGAAGGCTCAGGGACGCCAGATTGCACACGGCCACCTCTTCAGCATCTGTAAACTC 80951 || ||||| || || || ||||| || || || || || |||| | | | |||| Sbjct 95313 GGCAGGAAGAGCAAGAGAAGCAAGATTACAGACAGCAACTTCATCAGGAGAAGAATACTC 95254 Query 80952 GACGATTTCCGTGCACAAATTAGAAGACTTAATTGTACCCAGGTTTTTCTGGTTTGACTT 81011 | |||||| || || | ||| || || || ||||| |||| || ||||| ||||| Sbjct 95253 CATGATTTCAGTACAGAGGTTACTGGATTTGATGGTACCAAGGTGCTTTTGGTTGGACTT 95194 Query 81012 GGCGTTGCAAGCGTCCTTGTAGCACATGTACGGGGTACCGGTCTCGACCTGTGACTTGAG 81071 || |||| ||| ||||||||||| ||||| ||| ||| |||||| || | || ||| Sbjct 95193 GGAGTTGGCAGCATCCTTGTAGCAGATGTAAGGGACACCAGTCTCGGTTTGAGCCTCGAG 95134 Query 81072 GATGGCGTCCCAAATCTCGCGCGCCTTGACCACCTTGCGGAATTTGCCTTCGGCCACATA 81131 ||||||| ||||| || | || |||| || | ||||| | | | || Sbjct 95133 GATGGCGAACCAAAGCTTCTGGGCTTTGATAGTTTTCCTTCCCTTGCCCTGCCTCTCGTA 95074 Query 81132 CTTGGCGT-AAGCTTCGTCGAACTTGGCACCGTGAAGTTCAGTGAGGTCTGGGCACTCGT 81190 | | | |||||| || || | |||||| || || | || | ||||||||| Sbjct 95073 GCTCTCATAAAGCTT-TTCAAATTCTTCACCGTAAACGTCGGCAAGTCCAGGGCACTCGG 95015 Query 81191 TAGGGCACATCAGGTGCCAGTCGGTGTCGTTCTCTACAGCCTTCATGAAAGCGTCAGGGA 81250 || ||||| || ||| || ||| || ||| |||||||||| || | || Sbjct 95014 CGGGACACATAAGAGTCCAATCCCCATCGGATTCGACACGCTTCATGAAAAGATCGGAGA 94955 Query 81251 TCCAGAGGGCGGTGAACAGGTCGCGGCAGCGCG--CCTCCTCATCACCCTGGTTGAGGCG 81308 ||||||||||| ||| || || || ||| || ||||||| | ||| ||||| | Sbjct 94954 TCCAGAGGGCGTAGAAAAGATCACG--AGCTCGTACCTCCTCCTTACCATGGTTCTTCCT 94897 Query 81309 CAACTCGAGAAAGTCCATGATGTCCGCATGCCATGGCTCCAGATACACGGCGATCG-AC- 81366 || || | ||||| | | || || ||||| ||||| ||||| | ||||| | || Sbjct 94896 TAAGTCAATGAAGTCAAATACATCAGCGTGCCAAGGCTCAAGATAGATGGCGAAGGCACC 94837 Query 81367 ----CCCTTGCGACGGCCACCCTGGTTGACGTAACGGGCAGTCGCGTTAAATACACGCAA 81422 | |||| | ||||| || | ||||| || || || |||| | | || | Sbjct 94836 AGGACGCTTGTTA---CCACCTTGATCAACGTATCGAGCTGTGGCGTCGTAAGCTCGGAG 94780 Query 81423 CATAGGGATGATACCATCTGACTGACCGTTCGTACCCACGATACGCGACCCCTTGGCGCG 81482 |||||| ||||| || | || | ||| || ||||| | || || ||||| || || Sbjct 94779 CATAGGAATGATGCCGTTGGAGTAACCATTGGTACCGGCAATGTAGGAGCCCTTCGCACG 94720 Query 81483 CACCTTGCTGATTG-AAAGACCGATGCCACCTGACCACTTTGAAATCTGAGCACA 81536 | ||| ||| || |||||| || ||||| | ||| || ||||||||||| Sbjct 94719 GATATTG-TGAATGTGAAGACCAATACCACCGGCAGTCTTGGAGATCTGAGCACA 94666 >seq5 Length=47339 Score = 100 bits (110), Expect = 3e-16 Identities = 96/123 (78%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 64726 GCTTTTGCCTGTGTGGAAGGAATTTTCTTTTCTGGGTCATTCTGTTCTATTTTCTGGCTA 64785 |||||||| || |||||||| ||||||||||||||||| || | | || |||||| || Sbjct 13206 GCTTTTGCATGCGTGGAAGGCATTTTCTTTTCTGGGTCTTTTGCTGCAATCTTCTGGTTA 13265 Query 64786 AAAAAGCGGGGCCTGATGCCAGGTCTGTCGTTTTCGAACGAGCTGATCTCTCGGGACGAG 64845 || ||| | || ||||||| || ||| | ||||| |||||| ||||| |||| ||| Sbjct 13266 AAGAAGAGAGGGTTGATGCCTGGACTGACATTTTCAAACGAGTTGATCAGCAGGGATGAG 13325 Query 64846 GGG 64848 ||| Sbjct 13326 GGG 13328 >seq90 Length=80925 Score = 95.1 bits (104), Expect = 1e-14 Identities = 114/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 27427 CTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAG 27486 |||||||| ||||| || || || ||||| ||||| || | ||| | ||| | ||| Sbjct 51623 CTTACCGGAAAGACCATCACCCTCGAGGTCGAGTCCTCCGACACCATCGACAATGTCAAG 51564 Query 27487 GCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGT 27546 | || || |||||||||||||| || || || ||||||||||| | || || || || Sbjct 51563 TCCAAGATCCAGGACAAGGAGGGTATCCCCCCTGACCAGCAGCGATTGATCTTCGCCGGA 51504 Query 27547 AAGCAACTCGAGGATGATCGTACCCTAGCAGACTA 27581 ||||| |||||||| | | ||||| | ||||| Sbjct 51503 AAGCAGCTCGAGGACGGCAGGACCCTTTCTGACTA 51469 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570306215347440