Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022221
55.1_202017-07-20] 587 sequences; 18,505,623 total letters
Query= NC_029132.1
Length=140122
Score E
Sequences producing significant alignments: (Bits) Value
seq377 84.2 2e-11
>seq377
Length=14284
Score = 84.2 bits (92), Expect = 2e-11
Identities = 231/351 (66%), Gaps = 6/351 (2%)
Strand=Plus/Plus
Query 6777 GATCCTTCGGGTTCCACGCGCACATCACGATCCTTCTGTCATCAGGGTTCCGCTTCAAGG 6836
|| |||| |||||||| || | | | |||| |||||| || || ||| | ||
Sbjct 9021 GACCCTTTGGGTTCCAAGCCGATAAGATAATCCGCCTGTCAGTTGGATTGTTCTTGATGG 9080
Query 6837 TGTCGATCACGTACTGCAGCTGGTCCGCTCCCTGTCCCGAATAGTCCGCTTCGCTCCCCC 6896
||||||| || ||||| ||||| |||| | || |||||| | ||| |
Sbjct 9081 TGTCGATTACCCTTTGCAGTTGGTCGACTCCTTTGTCCTTATAGTCTCCGTCGGCATCAG 9140
Query 6897 GATACTCCGCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCT-CC 6955
||||| || ||||| |||||||||||||||||||| || || |||| || || | ||
Sbjct 9141 TGTACTCGGCACCAAAATGTCTCCACTGGAACCCGTACACAGGTCCCAGATCACCTTCCC 9200
Query 6956 TCCCGAGATGG--GAACCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGA 7013
| | | ||| || ||| ||| ||||| || ||| |||| | | |||||||
Sbjct 9201 TTCTG---TGGCCGAGCCCGACCTTCTCCAGGAATTCTTTGCTTCCGTTACCATCCCAGA 9257
Query 7014 TCTTCACCCCCCGGGACGAGAGCTCCTTGGTGTTCGTGGCCCCCCTCACGAACCACAGCA 7073
|| || ||| | |||||| |||||| || || || |||||||||| |
Sbjct 9258 TCCCTACGCCCTGACTAGAGAGCACCTTGGCGTCGGTACAACCAGAAACGAACCACAAAA 9317
Query 7074 GCTCCTCGACCACGCCCTTCCAGTACACACGTTTCGTCGTCAGCAGCGGAA 7124
|||| | | ||||| | | || ||||| |||||||| || ||||
Sbjct 9318 GCTCGGCAATGACGCCGCGAAGGAAGACGCGTTTGGTCGTCAGGAGAGGAA 9368
Score = 84.2 bits (92), Expect = 2e-11
Identities = 231/351 (66%), Gaps = 6/351 (2%)
Strand=Plus/Minus
Query 34221 TTCCGCTGCTGACGACGAAACGTGTGTACTGGAAGGGCGTGGTCGAGGAGCTGCTGTGGT 34280
|||| || |||||||| ||||| || | | ||||| | | ||||| ||||||
Sbjct 9368 TTCCTCTCCTGACGACCAAACGCGTCTTCCTTCGCGGCGTCATTGCCGAGCTTTTGTGGT 9309
Query 34281 TCGTGAGGGGGGCCACGAACACCAAGGAGCTCTCGTCCCGGGGGGTGAAGATCTGGGACG 34340
|||| || || || |||||| |||||| | ||| || ||||||||| |
Sbjct 9308 TCGTTTCTGGTTGTACCGACGCCAAGGTGCTCTCTAGTCAGGGCGTAGGGATCTGGGATG 9249
Query 34341 CTCACGGGTCTCGAGACTTTCTGGACAAGCGGGGGTTC--CCATCTCGGGAGG-AGGGCG 34397
| |||| ||| || ||||| ||| ||| || ||| | | ||| | || |
Sbjct 9248 GTAACGGAAGCAAAGAATTCCTGGAGAAGGTCGGGCTCGGCCA---CAGAAGGGAAGGTG 9192
Query 34398 ACTTGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGGCGGAGTATCGGGGGAGCG 34457
| |||| || || |||||||||||||||||||| ||||| || ||||| | ||
Sbjct 9191 ATCTGGGACCTGTGTACGGGTTCCAGTGGAGACATTTTGGTGCCGAGTACACTGATGCCG 9132
Query 34458 AAGCGGACTATTCGGGACAGGGAGCGGACCAGCTGCAGTACGTGATCGACACCTTGAAGC 34517
| | |||||| || | |||| ||||| ||||| || ||||||||| | |||
Sbjct 9131 ACGGAGACTATAAGGACAAAGGAGTCGACCAACTGCAAAGGGTAATCGACACCATCAAGA 9072
Query 34518 GGAACCCTGATGACAGAAGGATCGTGATGTGCGCGTGGAACCCGAAGGATC 34568
|| || |||||| |||| | | | || |||||||| |||| ||
Sbjct 9071 ACAATCCAACTGACAGGCGGATTATCTTATCGGCTTGGAACCCAAAGGGTC 9021
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 448259110874640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |