Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022221
55.1_202017-07-20] 587 sequences; 18,505,623 total letters
Query= NC_029692.1
Length=362276
Score E
Sequences producing significant alignments: (Bits) Value
seq449 167 5e-36
seq90 123 6e-23
>seq449
Length=79778
Score = 167 bits (184), Expect = 5e-36
Identities = 164/212 (77%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
|| ||||||||||| || ||||| ||||||||||| || || | ||| || | |||||
Sbjct 78485 AGAACAAGGTGAAGGGTAGACTCCTTTTGGATGTTGTAGTCGGAAAGAGTACGACCATCC 78426
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
||||| || || || || || || | ||||| || |||||||||| ||||||||||||
Sbjct 78425 TCCAGTTGTTTACCAGCAAAAATCAATCGTTGCTGATCAGGAGGAATACCTTCCTTGTCC 78366
Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082
|| ||||| || ||||| ||||| |||||||| || || || |||||||| |||
Sbjct 78365 TGAATCTTCGCCTTAACGTTGTCGATAGTGTCAGACGACTCGACTTCAAGAGTGATAGTC 78306
Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
||||| || | |||||| ||||| | ||||||
Sbjct 78305 TTTCCGGTCAAAGTCTTGACAAAGATCTGCAT 78274
Score = 154 bits (170), Expect = 3e-32
Identities = 129/158 (82%), Gaps = 0/158 (0%)
Strand=Plus/Minus
Query 210957 CCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCC 211016
||||||||||| ||||| || |||||||| | ||||||||||||||||| | || |||
Sbjct 78152 CCATCTTCCAGTTGCTTTCCGGCGAAGATCAATCGTTGTTGGTCAGGAGGGATACCCTCC 78093
Query 211017 TTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTG 211076
|||||||| ||||| || || || || |||||||||||| ||||||||| ||||||
Sbjct 78092 TTGTCCTGAATCTTCGCCTTGACATTGTCAATGGTGTCAGAGGATTCAACCTCAAGAGTG 78033
Query 211077 ATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
|| |||||||| || |||||||| || || | ||||||
Sbjct 78032 ATAGTCTTTCCGGTAAGAGTCTTGACGAAAATCTGCAT 77995
Score = 140 bits (154), Expect = 8e-28
Identities = 157/210 (75%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 210905 GACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTC 210964
||| || || || || ||||| |||||||| || ||||| | ||| || | ||||||||
Sbjct 77976 GACGAGATGGAGGGTAGACTCCTTTTGGATATTGTAATCGGAAAGAGTTCGGCCATCTTC 77917
Query 210965 CAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTG 211024
|| || || || |||||||| || ||||| || ||||| || | || |||||||| ||
Sbjct 77916 AAGTTGTTTTCCGGCGAAGATGAGTCGTTGCTGATCAGGGGGGATACCCTCCTTGTCTTG 77857
Query 211025 GATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTT 211084
|||||| || || || |||||||| ||||||||||| || || || || || || ||
Sbjct 77856 GATCTTGGCCTTGACATTGTCGATGGTATCAGAGCTTTCGACTTCAAGGGTAATGGTTTT 77797
Query 211085 TCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
|| ||||| || || || || | |||||
Sbjct 77796 GCCGGTGAGGGTTTTGACGAAGATTTGCAT 77767
Score = 131 bits (144), Expect = 4e-25
Identities = 129/167 (77%), Gaps = 0/167 (0%)
Strand=Plus/Minus
Query 210948 AGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGA 211007
|| ||||| |||||||| |||||||| || || ||||| | ||||| |||||||||||
Sbjct 77654 AGAGTCCTGCCATCTTCAAGCTGCTTACCAGCAAAGATCAATCGTTGCTGGTCAGGAGGG 77595
Query 211008 ACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACC 211067
| || |||||||| |||||||| || || || ||||||||||| || || ||
Sbjct 77594 ATACCCTCCTTGTCTTGGATCTTGGCCTTGACATTGTCGATGGTGTCGGAAGACTCCACT 77535
Query 211068 TCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
|| |||||||| ||||| || ||||||||||| || || | |||||
Sbjct 77534 TCAAGAGTGATAGTCTTACCGGTGAGAGTCTTGACGAAAATTTGCAT 77488
>seq90
Length=80925
Score = 123 bits (136), Expect = 6e-23
Identities = 121/156 (78%), Gaps = 0/156 (0%)
Strand=Plus/Plus
Query 210939 TAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGG 210998
|| || | ||||||||| || || || |||||||| || |||||||| | || || |||
Sbjct 51469 TAGTCAGAAAGGGTCCTGCCGTCCTCGAGCTGCTTTCCGGCGAAGATCAATCGCTGCTGG 51528
Query 210999 TCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAG 211058
||||| || | || ||||||||||||||||| || || || ||||||||||| |||
Sbjct 51529 TCAGGGGGGATACCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAG 51588
Query 211059 CTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGA 211094
|| |||||||| ||||| |||||||| || |||
Sbjct 51589 GACTCGACCTCGAGGGTGATGGTCTTTCCGGTAAGA 51624
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1159143282090255
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |