Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022221
55.1_202017-07-20] 587 sequences; 18,505,623 total letters
Query= NC_030230.1
Length=372707
Score E
Sequences producing significant alignments: (Bits) Value
seq449 156 1e-32
seq90 100 7e-16
>seq449
Length=79778
Score = 156 bits (172), Expect = 1e-32
Identities = 167/221 (76%), Gaps = 0/221 (0%)
Strand=Plus/Minus
Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552
|| || | || ||| || ||||| || || || ||||||| ||||||||||| | ||||
Sbjct 77987 CGGAGACGCAAGACGAGATGGAGGGTAGACTCCTTTTGGATATTGTAATCGGAAAGAGTT 77928
Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612
| |||||||| || || || || |||||||| |||||||| || || || || |||||
Sbjct 77927 CGGCCATCTTCAAGTTGTTTTCCGGCGAAGATGAGTCGTTGCTGATCAGGGGGGATACCC 77868
Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672
||||||||||||||||| ||| ||| |||||||| || ||| |||| || || |
Sbjct 77867 TCCTTGTCTTGGATCTTGGCCTTGACATTGTCGATGGTATCAGAGCTTTCGACTTCAAGG 77808
Query 225673 GTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713
|| || || ||||| || | ||||| | ||| | ||||||
Sbjct 77807 GTAATGGTTTTGCCGGTGAGGGTTTTGACGAAGATTTGCAT 77767
Score = 136 bits (150), Expect = 9e-27
Identities = 137/178 (77%), Gaps = 0/178 (0%)
Strand=Plus/Minus
Query 225536 TGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTT 225595
|||| |||| | ||| || |||||||| |||||||| ||||| ||||| | |||||| |
Sbjct 77665 TGTAGTCGGAGAGAGTCCTGCCATCTTCAAGCTGCTTACCAGCAAAGATCAATCGTTGCT 77606
Query 225596 GGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTG 225655
|||| || || ||||| ||||||||||||||||| ||| ||| ||||||||||| |
Sbjct 77605 GGTCAGGAGGGATACCCTCCTTGTCTTGGATCTTGGCCTTGACATTGTCGATGGTGTCGG 77546
Query 225656 AGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713
| | ||||| || | ||||| ||||| || || | ||| || | ||| | ||||||
Sbjct 77545 AAGACTCCACTTCAAGAGTGATAGTCTTACCGGTGAGAGTCTTGACGAAAATTTGCAT 77488
Score = 134 bits (148), Expect = 3e-26
Identities = 148/197 (75%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552
|| || | || ||| || ||||| || || || ||||||| ||||||||||| | ||||
Sbjct 78775 CGGAGACGCAAGACGAGATGGAGGGTAGACTCCTTTTGGATATTGTAATCGGAAAGAGTT 78716
Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612
| |||||||| || || || || |||||||| |||||||| || || || || |||||
Sbjct 78715 CGGCCATCTTCAAGTTGTTTTCCGGCGAAGATGAGTCGTTGCTGATCAGGGGGGATACCC 78656
Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672
||||||||||||||||| ||| || |||||||| || | ||| || || |
Sbjct 78655 TCCTTGTCTTGGATCTTGGCCTTGACGTTGTCGATGGTATCGCTCGATTCGACTTCAAGA 78596
Query 225673 GTGATCGTCTTGCCCGT 225689
||||| ||||| |||||
Sbjct 78595 GTGATTGTCTTACCCGT 78579
Score = 132 bits (146), Expect = 1e-25
Identities = 138/181 (76%), Gaps = 0/181 (0%)
Strand=Plus/Minus
Query 225533 CATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTT 225592
|| ||||||| | |||||||| |||||||| || ||||| || |||||||| | |||||
Sbjct 78175 CACTGTAATCAGACAAAGTTCGACCATCTTCCAGTTGCTTTCCGGCGAAGATCAATCGTT 78116
Query 225593 GTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGT 225652
||||||| || || ||||| |||||||| || ||||| ||| ||| || |||||||
Sbjct 78115 GTTGGTCAGGAGGGATACCCTCCTTGTCCTGAATCTTCGCCTTGACATTGTCAATGGTGT 78056
Query 225653 CTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCA 225712
| |||| ||| || || | ||||| ||||| || || | ||| || | ||| | ||||
Sbjct 78055 CAGAGGATTCAACCTCAAGAGTGATAGTCTTTCCGGTAAGAGTCTTGACGAAAATCTGCA 77996
Query 225713 T 225713
|
Sbjct 77995 T 77995
Score = 122 bits (134), Expect = 2e-22
Identities = 145/197 (74%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561
|| |||||||| || || || || ||||||| ||||| |||| | ||| | |||||
Sbjct 78485 AGAACAAGGTGAAGGGTAGACTCCTTTTGGATGTTGTAGTCGGAAAGAGTACGACCATCC 78426
Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621
|| || || || ||||| || || | |||||| || || || |||||||||||||||||
Sbjct 78425 TCCAGTTGTTTACCAGCAAAAATCAATCGTTGCTGATCAGGAGGAATACCTTCCTTGTCC 78366
Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681
|| ||||| ||| || ||||| ||||| || | || || || | ||||| |||
Sbjct 78365 TGAATCTTCGCCTTAACGTTGTCGATAGTGTCAGACGACTCGACTTCAAGAGTGATAGTC 78306
Query 225682 TTGCCCGTCAAAGTTTT 225698
|| || |||||||| ||
Sbjct 78305 TTTCCGGTCAAAGTCTT 78289
>seq90
Length=80925
Score = 100 bits (110), Expect = 7e-16
Identities = 106/140 (76%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 225550 GTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATA 225609
|| || || || || |||||||| || |||||||| | ||| || ||||| || || |||
Sbjct 51481 GTCCTGCCGTCCTCGAGCTGCTTTCCGGCGAAGATCAATCGCTGCTGGTCAGGGGGGATA 51540
Query 225610 CCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCT 225669
|| |||||||| |||||||| ||| ||| ||||||||||| |||| || || ||
Sbjct 51541 CCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAGGACTCGACCTCG 51600
Query 225670 AACGTGATCGTCTTGCCCGT 225689
| ||||| ||||| || ||
Sbjct 51601 AGGGTGATGGTCTTTCCGGT 51620
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1192522231047378
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |