Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022221 55.1_202017-07-20] 587 sequences; 18,505,623 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq185 105 1e-17 seq5 87.8 3e-12 >seq185 Length=108970 Score = 105 bits (116), Expect = 1e-17 Identities = 474/754 (63%), Gaps = 53/754 (7%) Strand=Plus/Minus Query 76519 TTCAAATTCATCTCCCCAAACATCATCCAAACCAGGACATTCATTCGGACACATCAATGA 76578 ||||||||| || || |||| || | | ||||| || || |||||||| | | Sbjct 95058 TTCAAATTCTTCACCGTAAACGTCGGCAAGTCCAGGGCACTCGGCGGGACACATAAGAGT 94999 Query 76579 CCACTCACCATCTTCCTTAACCCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAA 76638 ||| || ||||| | || || ||||| || ||||| | ||||| || || || Sbjct 94998 CCAATCCCCATCGGATTCGACACGCTTCATGAAAAGATCGGAGATCCAGAGGGCGTAGAA 94939 Query 76639 TAGATCTCGGGTTC-TACGTTCTTCATTTCCTGTATTCTTT-TTAAGATCTAGGAACTCC 76696 ||||| || | || ||| | || | | | || ||||| ||||| || | ||| || Sbjct 94938 AAGATCACGAGCTCGTACCTCCTCCTTACCATGG-TTCTTCCTTAAG-TCAATGAAGTCA 94881 Query 76697 ATAATATCAGAATGCCATGGTTCTAGATATATCGCCATAACACCCGGTCGTTTATTACCT 76756 | | ||||| ||||| || || ||||| || || | |||| || || || ||||| Sbjct 94880 AATACATCAGCGTGCCAAGGCTCAAGATAGATGGCGAAGGCACCAGGACGCTTGTTACCA 94821 Query 76757 CCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCGTTA 76816 || ||||| | |||| || ||| | ||| ||| | ||| ||||| |||||||| Sbjct 94820 CCTTGATCAACGTATCGAGCTGTGGCGTCGTAAGCTCGGAGCATAGGAATGATGCCGTTG 94761 Query 76817 GATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGATAGG 76876 || |||||| || || | ||| || || ||||| ||||| ||| || Sbjct 94760 GAGTAACCATTGGTACCGGCAATGTAGGAGCCCTTCGCACGGATATTGTGAATGTGAAGA 94701 Query 76877 CCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGATGCCC 76936 || || || || || | || ||||| |||||||| || | || || ||||| || Sbjct 94700 CCAATACCACCGGCAGTCTTGGAGATCTGAGCACAGGTCTTGAGAGTATCGTAGATACCA 94641 Query 76937 TCTATACTATCATCCATCATGTTAAGAAGAAAACAGCTAGACATTTGA------------ 76984 || || |||||| ||||| | || || || |||||||| Sbjct 94640 TCAATGGAGTCATCCTTCATGGCCACGAGGAAGCATGATGACATTTGGGGTCGGGGAGTA 94581 Query 76985 -------TGA--------------TG-----AACAGTTCCTGCATTA---------AAC- 77008 ||| || ||||| | | ||| | ||| Sbjct 94580 CCGGCGTTGAAAAGCTGTTATACTTGTCAGCAACAGACCTTTCATAATCGGTTGAAAACT 94521 Query 77009 -AATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTGTATGTTTCAATAAC 77067 | ||||| || ||||||||||| | | ||||| | ||||| || || || || || Sbjct 94520 TACAGTAGGGGAAGCATGAGTGAAATACCTCTCAGACATGAGATTATAGGTCTCGATCAC 94461 Query 77068 TGCTTCTATATCCCATTGATGAATTCCTACAGCGACACGCATCAACATATGCTGAGGTCG 77127 | || || | | ||| || || || ||||| ||||| | ||| |||||||| || Sbjct 94460 TTTCTCAATGTTGGAACCATGGATACCAACGGCGACTCGCATGATCATGTGCTGAGGGCG 94401 Query 77128 TTCTACAGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAAAGTTTTAAAACCAAA 77187 || ||| |||| ||| || | | | ||||||| | || | ||| || ||||| || Sbjct 94400 CTCGACAATCTTGCCATTAATCCTGAGAAGGTATGATCTCTCAAGAGTCTTGAAACCGAA 94341 Query 77188 ATAGTTGTATGAAAAGTCTCTTTCGTAAATAATA 77221 |||||||| | ||||||||| || || |||||| Sbjct 94340 GTAGTTGTAGGCAAAGTCTCTGTCATAGATAATA 94307 >seq5 Length=47339 Score = 87.8 bits (96), Expect = 3e-12 Identities = 98/131 (75%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 46651 CCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTT 46710 || ||||| || || || || ||||| |||||||| || |||||||| | || | ||| Sbjct 13327 CCCTCATCCCTGCTGATCAACTCGTTTGAAAATGTCAGTCCAGGCATCAACCCTCTCTTC 13268 Query 46711 TTGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAAT 46770 || | ||| || || || || ||||| ||||||||||| |||||||| || || || Sbjct 13267 TTTAACCAGAAGATTGCAGCAAAAGACCCAGAAAAGAAAATGCCTTCCACGCATGCAAAA 13208 Query 46771 GCGACAAGTCT 46781 || || ||||| Sbjct 13207 GCCACCAGTCT 13197 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712929168843840