Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022221
55.1_202017-07-20] 587 sequences; 18,505,623 total letters
Query= NC_031038.1
Length=222832
Score E
Sequences producing significant alignments: (Bits) Value
seq185 105 1e-17
seq5 87.8 3e-12
>seq185
Length=108970
Score = 105 bits (116), Expect = 1e-17
Identities = 474/754 (63%), Gaps = 53/754 (7%)
Strand=Plus/Minus
Query 76519 TTCAAATTCATCTCCCCAAACATCATCCAAACCAGGACATTCATTCGGACACATCAATGA 76578
||||||||| || || |||| || | | ||||| || || |||||||| | |
Sbjct 95058 TTCAAATTCTTCACCGTAAACGTCGGCAAGTCCAGGGCACTCGGCGGGACACATAAGAGT 94999
Query 76579 CCACTCACCATCTTCCTTAACCCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAA 76638
||| || ||||| | || || ||||| || ||||| | ||||| || || ||
Sbjct 94998 CCAATCCCCATCGGATTCGACACGCTTCATGAAAAGATCGGAGATCCAGAGGGCGTAGAA 94939
Query 76639 TAGATCTCGGGTTC-TACGTTCTTCATTTCCTGTATTCTTT-TTAAGATCTAGGAACTCC 76696
||||| || | || ||| | || | | | || ||||| ||||| || | ||| ||
Sbjct 94938 AAGATCACGAGCTCGTACCTCCTCCTTACCATGG-TTCTTCCTTAAG-TCAATGAAGTCA 94881
Query 76697 ATAATATCAGAATGCCATGGTTCTAGATATATCGCCATAACACCCGGTCGTTTATTACCT 76756
| | ||||| ||||| || || ||||| || || | |||| || || || |||||
Sbjct 94880 AATACATCAGCGTGCCAAGGCTCAAGATAGATGGCGAAGGCACCAGGACGCTTGTTACCA 94821
Query 76757 CCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCGTTA 76816
|| ||||| | |||| || ||| | ||| ||| | ||| ||||| ||||||||
Sbjct 94820 CCTTGATCAACGTATCGAGCTGTGGCGTCGTAAGCTCGGAGCATAGGAATGATGCCGTTG 94761
Query 76817 GATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGATAGG 76876
|| |||||| || || | ||| || || ||||| ||||| ||| ||
Sbjct 94760 GAGTAACCATTGGTACCGGCAATGTAGGAGCCCTTCGCACGGATATTGTGAATGTGAAGA 94701
Query 76877 CCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGATGCCC 76936
|| || || || || | || ||||| |||||||| || | || || ||||| ||
Sbjct 94700 CCAATACCACCGGCAGTCTTGGAGATCTGAGCACAGGTCTTGAGAGTATCGTAGATACCA 94641
Query 76937 TCTATACTATCATCCATCATGTTAAGAAGAAAACAGCTAGACATTTGA------------ 76984
|| || |||||| ||||| | || || || ||||||||
Sbjct 94640 TCAATGGAGTCATCCTTCATGGCCACGAGGAAGCATGATGACATTTGGGGTCGGGGAGTA 94581
Query 76985 -------TGA--------------TG-----AACAGTTCCTGCATTA---------AAC- 77008
||| || ||||| | | ||| | |||
Sbjct 94580 CCGGCGTTGAAAAGCTGTTATACTTGTCAGCAACAGACCTTTCATAATCGGTTGAAAACT 94521
Query 77009 -AATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTGTATGTTTCAATAAC 77067
| ||||| || ||||||||||| | | ||||| | ||||| || || || || ||
Sbjct 94520 TACAGTAGGGGAAGCATGAGTGAAATACCTCTCAGACATGAGATTATAGGTCTCGATCAC 94461
Query 77068 TGCTTCTATATCCCATTGATGAATTCCTACAGCGACACGCATCAACATATGCTGAGGTCG 77127
| || || | | ||| || || || ||||| ||||| | ||| |||||||| ||
Sbjct 94460 TTTCTCAATGTTGGAACCATGGATACCAACGGCGACTCGCATGATCATGTGCTGAGGGCG 94401
Query 77128 TTCTACAGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAAAGTTTTAAAACCAAA 77187
|| ||| |||| ||| || | | | ||||||| | || | ||| || ||||| ||
Sbjct 94400 CTCGACAATCTTGCCATTAATCCTGAGAAGGTATGATCTCTCAAGAGTCTTGAAACCGAA 94341
Query 77188 ATAGTTGTATGAAAAGTCTCTTTCGTAAATAATA 77221
|||||||| | ||||||||| || || ||||||
Sbjct 94340 GTAGTTGTAGGCAAAGTCTCTGTCATAGATAATA 94307
>seq5
Length=47339
Score = 87.8 bits (96), Expect = 3e-12
Identities = 98/131 (75%), Gaps = 0/131 (0%)
Strand=Plus/Minus
Query 46651 CCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTT 46710
|| ||||| || || || || ||||| |||||||| || |||||||| | || | |||
Sbjct 13327 CCCTCATCCCTGCTGATCAACTCGTTTGAAAATGTCAGTCCAGGCATCAACCCTCTCTTC 13268
Query 46711 TTGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAAT 46770
|| | ||| || || || || ||||| ||||||||||| |||||||| || || ||
Sbjct 13267 TTTAACCAGAAGATTGCAGCAAAAGACCCAGAAAAGAAAATGCCTTCCACGCATGCAAAA 13208
Query 46771 GCGACAAGTCT 46781
|| || |||||
Sbjct 13207 GCCACCAGTCT 13197
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 712929168843840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |