Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022221 55.1_202017-07-20] 587 sequences; 18,505,623 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq449 149 1e-30 >seq449 Length=79778 Score = 149 bits (164), Expect = 1e-30 Identities = 159/210 (76%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 151895 GACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTC 151954 ||| ||||| || |||||||| |||||||| |||||||||| | ||||| |||||||| Sbjct 77976 GACGAGATGGAGGGTAGACTCCTTTTGGATATTGTAATCGGAAAGAGTTCGGCCATCTTC 77917 Query 151955 TAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTG 152014 || ||| ||||||||||| || | ||||| || | | ||| || ||||| ||||| Sbjct 77916 AAGTTGTTTTCCGGCGAAGATGAGTCGTTGCTGATCAGGGGGGATACCCTCCTTGTCTTG 77857 Query 152015 AATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTT 152074 || || |||||| | || | | | || || || || |||||||| ||||| ||||| Sbjct 77856 GATCTTGGCCTTGACATTGTCGATGGTATCAGAGCTTTCGACTTCAAGGGTAATGGTTTT 77797 Query 152075 GCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||| ||||| || || ||||||| ||||| Sbjct 77796 GCCGGTGAGGGTTTTGACGAAGATTTGCAT 77767 Score = 109 bits (120), Expect = 1e-18 Identities = 152/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951 ||| ||||| ||||| |||||||| |||||||||||||| |||| | ||| | ||||| Sbjct 78486 GAGAACAAGGTGAAGGGTAGACTCCTTTTGGATGTTGTAGTCGGAAAGAGTACGACCATC 78427 Query 151952 TTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTC 152011 || || ||| || || || || | | ||||| || | | || |||||||| || Sbjct 78426 CTCCAGTTGTTTACCAGCAAAAATCAATCGTTGCTGATCAGGAGGAATACCTTCCTTGTC 78367 Query 152012 TTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGT 152071 ||||| || || || | || | |||| || ||| ||||||||||| ||||| Sbjct 78366 CTGAATCTTCGCCTTAACGTTGTCGATAGTGTCAGACGACTCGACTTCAAGAGTGATAGT 78307 Query 152072 TTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || | |||||| || |||| |||||| Sbjct 78306 CTTTCCGGTCAAAGTCTTGACAAAGATCTGCAT 78274 Score = 105 bits (116), Expect = 2e-17 Identities = 140/193 (73%), Gaps = 6/193 (3%) Strand=Plus/Minus Query 151895 GACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTC 151954 ||| ||||| || |||||||| |||||||| |||||||||| | ||||| |||||||| Sbjct 78764 GACGAGATGGAGGGTAGACTCCTTTTGGATATTGTAATCGGAAAGAGTTCGGCCATCTTC 78705 Query 151955 TAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTG 152014 || ||| ||||||||||| || | ||||| || | | ||| || ||||| ||||| Sbjct 78704 AAGTTGTTTTCCGGCGAAGATGAGTCGTTGCTGATCAGGGGGGATACCCTCCTTGTCTTG 78645 Query 152015 AATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTC---TCTACTTCAAGAGTAATAGT 152071 || || ||||| | || | | | || ||| || ||||||||||| || || Sbjct 78644 GATCTTGGCCTTGACGTTGTCGATGGTATC---GCTCGATTCGACTTCAAGAGTGATTGT 78588 Query 152072 TTTGCCCGTGAGA 152084 || ||||| ||| Sbjct 78587 CTTACCCGTAAGA 78575 Score = 100 bits (110), Expect = 7e-16 Identities = 129/178 (72%), Gaps = 0/178 (0%) Strand=Plus/Minus Query 151927 TGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCT 151986 |||| |||| | ||| || |||||||| || || || || ||||| | | |||| Sbjct 77665 TGTAGTCGGAGAGAGTCCTGCCATCTTCAAGCTGCTTACCAGCAAAGATCAATCGTTGCT 77606 Query 151987 GGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTG 152046 |||| | | ||| || ||||| ||||| || || |||||| | || | | |||| | Sbjct 77605 GGTCAGGAGGGATACCCTCCTTGTCTTGGATCTTGGCCTTGACATTGTCGATGGTGTCGG 77546 Query 152047 AACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || ||| ||||||||||| ||||| || || ||||||||||| ||||| | ||||| Sbjct 77545 AAGACTCCACTTCAAGAGTGATAGTCTTACCGGTGAGAGTCTTGACGAAAATTTGCAT 77488 Score = 98.7 bits (108), Expect = 2e-15 Identities = 131/180 (73%), Gaps = 4/180 (2%) Strand=Plus/Minus Query 151927 TGTAATCGGCTAAAGTTCTCCCATCTTCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTG 151984 ||||||| | ||||||| |||||||| || ||||| ||||||||||| | | || Sbjct 78172 TGTAATCAGACAAAGTTCGACCATCTTCCAGTTGCTTT--CCGGCGAAGATCAATCGTTG 78115 Query 151985 CTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTC 152044 ||||| | | ||| || ||||| || ||||| || |||||| | || | | |||| Sbjct 78114 TTGGTCAGGAGGGATACCCTCCTTGTCCTGAATCTTCGCCTTGACATTGTCAATGGTGTC 78055 Query 152045 TGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || |||||||| ||||| || || || |||||||| ||||| | |||||| Sbjct 78054 AGAGGATTCAACCTCAAGAGTGATAGTCTTTCCGGTAAGAGTCTTGACGAAAATCTGCAT 77995 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153812122185877